Sphingobacterium bambusae: SCB77_16535
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Entry
SCB77_16535 CDS
T09645
Name
(GenBank) Y4yA family PLP-dependent enzyme
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam00300
Lysine biosynthesis
sbam00470
D-Amino acid metabolism
sbam01100
Metabolic pathways
sbam01110
Biosynthesis of secondary metabolites
sbam01120
Microbial metabolism in diverse environments
sbam01230
Biosynthesis of amino acids
Module
sbam_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SCB77_16535
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SCB77_16535
Enzymes [BR:
sbam01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
SCB77_16535
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Ala_racemase_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-ProteinID:
WPL47563
LinkDB
All DBs
Position
complement(3970963..3972384)
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AA seq
473 aa
AA seq
DB search
MKATAKDKHISLTPILHPWIQQLLHDKDLLAETVKQENSPVNIQSVLPFRENIAEYQTIF
ERYGLKHKIYFARKANKCLTFAKVAAAAGEGVDTASLKEMQQCLEAGISGDHLILTAAIK
NIPLLELAVQHHVTIIIDNMDEYESLDSIVRANEVPATISIRVGGFLMEDEKIPTRFGFS
LTEAYRILTEQIKDHPFLAFNGLHFHLNGYSIDQRAAAIVQCIDLIDKLAAEGISCQQLD
IGGGYLVNYLERKEEWITFHQELKRAVLGQRSALTYQNDPLGMTLINGQLYGEPTVYPYH
NEQAKGIFLEQILTSQAVPYDKPIHELIQARNLTLCIEPGRSLLDQAGITVARIVFRKQD
TEGNLLVGLEMNRTQMKSSSADFLLDPIHITHQSTEQQEAVSGYLVGGYCLEQEFLLKRK
IQFATYPQVGDLIVFPNTAGYMMHFFESQAHQFALASNVFCNENLHMDKHDGD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctacagccaaggataaacatatttcacttacgccgatactacatccatggata
cagcagctactgcacgacaaggatcttttagcggaaaccgttaaacaagagaattcgcca
gtcaatatacaaagcgtactgcccttccgagaaaacatagccgagtatcaaacgatcttc
gaacgttacggcctaaagcataaaatatactttgcgcgcaaagcaaataaatgcttgacc
tttgcgaaagttgccgcggcagcaggagaaggtgtagatacagccagtctgaaggagatg
cagcaatgcttggaagccggaatttccggcgaccatttgatcctgacggcggcgataaaa
aatatccctttactagaacttgccgtccaacatcatgtgaccatcattatcgacaatatg
gacgagtatgaatcgttggacagtatcgtccgcgcaaacgaggttccagcgaccattagt
atacgcgttggaggcttccttatggaagatgaaaaaataccaacgcgttttggattttcc
ttaactgaagcctataggattctaaccgaacagatcaaagaccatcctttcttggctttt
aacggcctccacttccatttgaatggctattccatcgatcaacgtgcggcagcaatagtg
caatgtattgatttgatagataagctcgcagcggaaggcatatcttgccaacagctagac
atcggaggcggctatttggttaactatctagagcgcaaagaagagtggatcacgtttcat
caagaattaaaaagggcggtattgggacaacgaagcgcgctaacctaccaaaatgatccg
ttgggcatgacactcatcaacggacagttatatggcgaaccaacggtatacccataccac
aacgaacaagcaaaaggaattttcttggaacaaattttaacgagccaagctgttccctac
gataagcccattcacgaactgattcaggcgcgcaacttaaccttatgtatcgagcctggt
cgctccttactcgatcaggccggcattaccgtcgcgcgtattgtatttaggaagcaagat
accgaaggtaatctcttggtaggcttggaaatgaaccgcacgcaaatgaaaagttccagc
gccgattttctattggatcccatacacatcacccatcaatctacagaacaacaggaagct
gtaagcggttacctcgtcggtggatattgcttagagcaagaattcttgctgaaacgaaaa
atacagttcgctacgtatccgcaagtcggcgacctcattgtttttccaaatacagctgga
tatatgatgcattttttcgaatcccaagcgcatcagtttgcgctagcaagtaatgtattc
tgcaacgaaaacttacatatggataaacatgacggcgattaa
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