Sphingobacterium bambusae: SCB77_17370
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Entry
SCB77_17370 CDS
T09645
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sbam
Sphingobacterium bambusae
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbam03016
]
SCB77_17370
Enzymes [BR:
sbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCB77_17370
Transfer RNA biogenesis [BR:
sbam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCB77_17370
Prokaryotic type
tRNA splicing ligases
SCB77_17370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPL47719
LinkDB
All DBs
Position
complement(4180301..4181692)
Genome browser
AA seq
463 aa
AA seq
DB search
MGNKLSGKDLIKMGFPQNNTVNIALGQIHRYRKREKKERILQEAKEVLRSPKDFMGDAIW
GKVAEGLIQPVEIRLRQLNSNRAPFCIFGENEIDELAKRQLYDALKLPVSIKGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSIFDIPGSYLKGRTYQLRNLLSEHSKFG
MNETHKVKSDHEIFERAAFKDIPLLKSLRDKAYRQLGTSGGGNHFVEFGIVQLQESRADW
KLPKGEYLALLSHSGSRGLGANIAKHYTYLATKQCPLPRQVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDDIHRRMAKAIGSRPAVIIENHHNFAWEEVVDGKRCIVHRKGATPAGK
GVLGIIPGSMTAPGFIVEGKGNPLSLASASHGAGRVLSRGACKSTIKKSDMLKTLENQGV
ELIGGAVDEAPMAYKNIHTVMALQDELVQVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatccggaaaggaccttatcaaaatgggctttccacaaaataatacg
gtgaacatcgccctagggcagattcatcgctatcgcaaacgcgagaaaaaagaacgcata
ttacaggaggcgaaggaagtactgcgctcaccgaaagactttatgggcgatgccatatgg
ggcaaggtagccgaaggacttatccaaccggtagagattcgcttacggcagctcaacagt
aaccgagctcctttctgcatattcggtgaaaacgagatcgatgagctggcgaaaagacaa
ttgtacgatgctttaaaacttccggtatcgatcaagggtgcgttgatgcccgatgcacat
tcgggatatggcttgcctataggcggagttttagctacggacaacgcggtgataccctac
ggtgtaggtgtcgatatcggctgcaggatgagtttatccatttttgatatccctggctcc
tatcttaaggggcggacctatcaattgagaaatctgctgtcggagcatagcaaatttggg
atgaatgaaacgcacaaagtaaaaagcgaccacgaaatctttgagcgagcggctttcaag
gatattcctttgttgaaatcgttgcgtgataaggcatatcgccaactgggcacctctggt
ggcggcaatcatttcgtggagttcggcatagtgcagttacaggagtctcgcgccgactgg
aagttgccaaaaggcgaatatcttgccttgttatcgcacagcggatcgcgggggttgggt
gcaaacattgcaaagcactatacctacttggcgacaaagcaatgtccgcttcctcgacag
gtacaacacctagcgtggttagacctaaatacgcacgacggacaggaatattggcttgcc
atgaacctcgccggcgactatgcgaaggcctgccatgatgatatacatcgtcgaatggcc
aaggcaattggaagtagacctgcggtgattatcgaaaaccatcacaattttgcatgggaa
gaggtagtggatggcaagcgatgcatcgtgcaccgtaagggtgcgacacccgcaggaaaa
ggtgtattgggcatcataccaggatccatgaccgcgccgggcttcattgtcgagggaaaa
ggcaatcctttaagtctagcatccgcttcacacggcgccggacgcgttctatctcgcgga
gcatgcaagagtactataaaaaagagcgacatgctcaaaacattagaaaaccaaggggtg
gaacttattggaggagcggtagacgaagcaccaatggcctacaaaaatatacacacggtc
atggccttacaagacgagctcgttcaagtattgggcaccttcacccccaaaattgtccgc
atggacaaataa
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