Sphingobacterium bambusae: SCB77_19815
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Entry
SCB77_19815 CDS
T09645
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sbam
Sphingobacterium bambusae
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbam03016
]
SCB77_19815
Enzymes [BR:
sbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCB77_19815
Transfer RNA biogenesis [BR:
sbam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCB77_19815
Prokaryotic type
tRNA splicing ligases
SCB77_19815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WPL48203
LinkDB
All DBs
Position
4772657..4774075
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AA seq
472 aa
AA seq
DB search
MENKRINGNDLLALGYAENSALGVALQINKKRLGFTREQMLAHFSAILANPEAYAEDAVF
KTLAQELLKQDELEASYIALKEEGHYEIYGEEHIEEGAKQQMQVAMTLRVSVAGALMPDA
HQGYGLPIGGVLATGNAVIPYGVGVDIGCRMALSIFDLPAAYLTEHSDALKKVIMQTTKF
GAGQGFQKGDRASHAVLEQDTFAMNDLLRSLKDKAWAQLGTSGGGNHFVEFGVIAFDQAD
AELGIEAGEYVALLTHSGSRGLGATLADHYTKLAKQLCKLPYKAQHLAYLDLGTAEGQEY
WMAMNLAGDYTSACHEVIHEKVRHQLGAERLAKVENHHNFAWKEMWNGQELIVHRKGATP
AAKGVMGIIPGSMASPGFLVRGKGQMESINSASHGAGRLMSRTKAIKTLAPSDLKAILND
QGITLMGAGMDEAPMAYKDIHTVMAAQQDLVDVLATFSPKIVRMADDGSRED
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaaacgtataaatggtaacgatctattggccttgggctatgccgaaaattct
gctttgggcgtcgccttgcagatcaataagaaaagattgggctttacgcgtgagcagatg
ctagctcatttctcggctatattggccaatccggaagcgtatgctgaagatgcagttttt
aagacattggcgcaggagctgttgaagcaagatgagctggaagcctcgtatatcgcactt
aaagaagaggggcattacgaaatttacggggaagagcatattgaagaaggggcgaagcag
cagatgcaagtagctatgacgttgcgtgtctctgtagccggcgccctgatgccagacgcg
caccaaggctatggcttgcctatcggcggggtgctggccacgggcaatgccgtcattccc
tacggcgtgggcgtggatatcggttgtcgcatggcgttgtctatttttgatctacctgcc
gcatacctgacggagcatagcgatgcgttaaagaaagtcattatgcaaaccacgaagttt
ggcgctggccaaggtttccaaaaaggagatcgagcaagccatgccgttttagagcaggat
acttttgccatgaacgatttgttgcgttcgttgaaggataaggcttgggcgcaactaggg
acttccggagggggaaatcacttcgtggagtttggggtgatagcctttgatcaggcggat
gcggaattaggtattgaagcgggtgaatatgtcgcgctattgacgcattcgggatcacgc
gggctgggggcaacgttagccgaccactacaccaaactagctaagcagctttgtaaactg
ccttataaagcacaacatttggcttacctagatttgggaacggccgaaggacaggaatat
tggatggcgatgaatttagcgggcgactacacatcggcatgtcacgaagtgatccatgaa
aaggtgcgccatcagctgggggcagagcgcttggcaaaggtcgaaaaccaccacaacttt
gcatggaaggagatgtggaatgggcaagagctgattgtacaccgaaagggagcaacgcct
gcagccaaaggggtaatgggtattattccgggttccatggcctcgccaggattcttggtg
cgcggtaaaggacagatggagtccatcaactcggcctcgcacggtgccggacgattgatg
agccgtacaaaggcaataaagacgctggcgccatcggatttaaaggctatcctaaatgat
caagggatcactttgatgggggccggtatggatgaagcgcctatggcctataaagacata
cataccgtgatggctgcgcagcaggatcttgttgacgtgttggctacattctcgcctaag
attgtgcggatggccgacgatggtagtcgagaggattag
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