Sphingobacterium bambusae: SCB77_20180
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Entry
SCB77_20180 CDS
T09645
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCB77_20180 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbam03019
]
SCB77_20180 (recQ)
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_20180 (recQ)
Enzymes [BR:
sbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCB77_20180 (recQ)
Messenger RNA biogenesis [BR:
sbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCB77_20180 (recQ)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCB77_20180 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
RNase_H_2
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
WPL48269
LinkDB
All DBs
Position
4867090..4869279
Genome browser
AA seq
729 aa
AA seq
DB search
MEIEKSLFDNLQEFFGFDTFKGDQEAIITNILNKKDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGNESIAHFLNSSLNKSEITKVKQDVTDGKTKLLYVAP
ESLAKEENTQFLRQIKVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGEGIPIIALTA
TATPKVQSDIRKNLQMNDATLFKSSFNRSNLYYEVRTKKNVVKEIVKFIRANAGKTGIIY
CLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVQVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCLAFYSEKDVEKLTKFMKDKPVSEREI
GTQILKEVIDYSESSVCRRKQILHYFGEQFDETGCNSMCDNCRTQKTQFDAEESLLEVLG
FVKEQGDKFDDHHIINVMIGQNNQPISAYKHDTHPLFGKGKEKGVNYWKSLIRQAELNGF
MKKDIDHYGLLILTESGKKYLANPYAIKFILNRPMEKSDDELGDDIGAGAGALDTELLKM
LKELRKKLAKQKSLPPFVIFQDPSLDEMCTHYPVSLDELKQIQGVGAGKATKFGVPFVEM
IKKYVDDNDIDRPQDMVVKSTANKSALKVSIIQNIDRKIGLDDIASSKGISYEDLLKEVE
SIVNSGTKLNIGYFVDEMIDRDRQDEVYDYFRSAEVDSIKEALAELGEEDYTFEDVQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaaaatcactatttgacaatttgcaggaatttttcggcttcgatacattc
aaaggtgatcaggaagctatcataacaaacatccttaacaagaaagatacgtttgttatt
atgcctactggtggagggaaatcaatctgttatcaattacccgctttgatgagcgagggt
accgcaatcgttatttctccgttgattgccttgatgaaaaatcaagtcgatcaattacgg
gcatttggcggcaatgagagcattgctcactttcttaattcatcgctcaataagagcgaa
atcactaaggtgaagcaggatgtgaccgatgggaaaacgaagttgctttatgtggctccc
gaatcgttggcgaaagaagaaaatacgcagttcttgcggcagattaaggtatcttttgtt
gcggtggacgaggcacactgtatctcggagtgggggcatgacttccgaccagaataccgt
aagattcgtcaggttatcaacggcattggggaaggtattcctatcattgccttgacagca
acggccacaccgaaggtgcaatccgacatccgtaaaaatttgcagatgaacgatgccacc
ctgttcaaatcgtcttttaaccgatccaacttgtactacgaggtgcgtaccaagaagaat
gttgtgaaagagatcgtgaagttcattcgtgcgaatgcaggcaagactggtattatttac
tgtttgagtcgcaagaaggtggaggagattgctgaagttttaaatattaacgggatcaag
gcgctgccctaccatgcagggctagatgccaagacaagggccgatacacaggataagttt
ctgatggaagatgtgcaggtcatcgtggcgacgatagcttttggtatgggtatcgataag
ccggatgtgcgctatgtgatccaccacgacattccgaagtctatggaaggttattaccaa
gagacagggcgtgcggggcgcgatggtggcgaaggctactgcttggccttctattcggaa
aaggatgtcgagaagcttacaaaatttatgaaggataagccggtttcggaacgggaaatt
ggtacacagatattaaaagaggtgatcgactattcggaatcctcggtttgccgtaggaag
cagatattgcactatttcggcgagcaatttgacgaaaccggctgcaacagcatgtgcgac
aattgccgcacgcagaaaacacagtttgatgctgaagaatcgctgttggaggtgcttggt
tttgtgaaggaacagggagacaaattcgacgatcaccacattatcaatgtgatgattggg
caaaacaaccaacccatatcggcctacaagcatgatacacatcctttgtttggtaagggt
aaggagaagggcgtaaactattggaaatcattgatccggcaagcggagcttaacggattt
atgaagaaggatatcgaccattatgggctactgatattgacggagagcggaaagaaatat
ttggccaatccttatgccatcaaatttatcttgaaccggccgatggaaaaatcggatgat
gagctgggggatgatattggtgcaggcgccggagcattggataccgaactgttgaagatg
ttgaaggagcttcgaaaaaaactggccaagcaaaaatcgctgccgccttttgtaattttt
caggatccgtcgttggatgagatgtgtacgcactatccggtaagcttggatgagctgaag
cagattcaaggggtaggagccggcaaggccacgaaatttggtgttcctttcgtggaaatg
atcaagaagtatgtggatgataacgacatcgaccgtccgcaggatatggtggtgaaaagt
accgcaaacaaatcggcgttgaaggtttccattatccaaaatatagaccgtaaaattggt
ctagacgatattgcttcgtcgaagggtatcagttatgaagatctgctgaaagaagtggaa
tcaatcgtaaactcgggtaccaagctcaatattggctattttgtggacgaaatgatcgat
cgtgaccgtcaggatgaggtgtacgactatttccgatctgccgaggtagattccattaag
gaagctttggccgagcttggcgaggaagattacacgtttgaagatgtgcagttgatgcgg
atcaagttcatgtcagaattaggaaattaa
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