Sphingobacterium bambusae: SCB77_20530
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Entry
SCB77_20530 CDS
T09645
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCB77_20530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbam03019
]
SCB77_20530
Enzymes [BR:
sbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCB77_20530
Messenger RNA biogenesis [BR:
sbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCB77_20530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
CMS1
Utp25_C
HEM4
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
HI1480
EB1
Motif
Other DBs
NCBI-ProteinID:
WPL48336
LinkDB
All DBs
Position
complement(4947926..4949062)
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AA seq
378 aa
AA seq
DB search
MTFQDLNIIPPILDAIREMGYNNPSPIQEKAIPVILSNKDLIGCAQTGTGKTAAFAIPSI
QKIAAVKSSNGAPRVLVLTPTRELAIQIEENFKLYGKYLKTRQTLIFGGVSANMQISSLR
KGTDIVIATPGRLLDLARQQEIKLSSVEILVLDEADTMLDMGFVNDIKKILSFLPAKRQT
LFFSATMPPPIRKFATSILRENVEINVNPVSSTAALIEQSVYHVEKPEKPKFLVSLLRQE
NPKQTLVFTRTKHGADRVAKMLNKQGFHAMAIHGNKSQGARQKALSEFKNGKIQILVATD
IAARGIDIDELPHVINYELPEVSETYVHRIGRTGRAGKTGIAVSLCSSEERKNLDGIQKL
TGNVIKVAKLKSRKESVA
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcaagatttaaacattattccgcctattctagacgctatacgcgaaatgggc
tataacaacccttcgcctatacaggagaaggctataccggttattttgagcaataaagac
cttattggttgtgcacaaactggcacgggaaaaacggcagcctttgccattccatccatt
caaaaaattgcagcagtaaagtcgtctaatggagcaccacgtgtgctggtattgacgcct
acacgcgagctggccatacaaatagaagaaaacttcaagttatacggaaaatacctaaag
accagacaaacgttgatattcggaggcgtttctgccaacatgcagattagcagcctgcgc
aaaggtactgacatcgtcatcgctacgccgggacgtctactagacttggcacggcagcag
gaaattaaactttcttcggtagagatccttgtgctcgatgaagcagacaccatgctggat
atgggttttgtgaatgatatcaagaaaatattaagcttcctaccggcgaaaagacaaacc
ctgttcttttcggcaacgatgccacctcctatccgcaagtttgctacatccatccttcgc
gaaaatgtagagatcaacgtaaatccggtgtcgtcaacggcagcacttatcgagcagtcg
gtatatcatgtggaaaaacccgaaaaaccaaagtttctcgtttccctattgcgacaagaa
aacccgaaacagacactagtgttcactcggacgaagcacggtgccgatcgcgttgcgaag
atgctcaacaagcaaggttttcatgccatggccatacacggaaacaagtcgcaaggtgct
cgccaaaaggcattgagtgagttcaaaaatggaaaaatacagatcttagtggcaacggat
attgcggcacgaggtatagacatcgacgagctacctcacgtgatcaactacgaactgccc
gaagtatccgaaacctacgtgcaccgtatcggtagaacgggtagagccggaaaaaccggt
attgctgtatcgctatgcagcagtgaggaacgtaaaaacctcgatggcatacagaaatta
acaggcaacgtgatcaaggtggcaaaattaaagtcacgcaaggaaagcgtagcctaa
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