Sphingobacterium bambusae: SCB77_20965
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Entry
SCB77_20965 CDS
T09645
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sbam
Sphingobacterium bambusae
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbam03032
]
SCB77_20965 (topA)
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_20965 (topA)
Enzymes [BR:
sbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SCB77_20965 (topA)
DNA replication proteins [BR:
sbam03032
]
Prokaryotic type
DNA Topoisomerases
SCB77_20965 (topA)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SCB77_20965 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SPAR
Motif
Other DBs
NCBI-ProteinID:
WPL48423
LinkDB
All DBs
Position
5058402..5060804
Genome browser
AA seq
800 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKTDDAIDTEDNFKQKYEVPSDK
KSVVSELKKLAKEAEMVWLASDEDREGEAISWHLYETLALKDDKTKRIVFHEITKPAILS
AIEKPRKIDFNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVERER
EINRFEAEASYKIVAQFTTGKGREQFKAELPHRFERKEDAAQFLNDCIQASFSIASLEKK
PAKRSPSAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGRITYMRTDSVNLSDTAINA
AEQEIVNAYGEKYHKLRRYKTKSAGAQEAHEAIRPTYFSEHSIDGDNAERRLYELIWKRA
IASQMSEAEFEKTTAKIDVSTRSEDLVATGEIMKFDGFLKVYMESSDDDSENTQDQEGDN
ALLPPLEKGQALSLKAMNATQRFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNR
GYVVKEDRDGRERHYTVLTISEQQVLEELKTETTGAERSKMFPTDIGVLVNDFLVEHFND
IIDYHFTAKVEKEFDEIAQGDKEWTAMLKDFYGPFHHGIQDTLENADRASHERELGVDPA
SGKPVTVRVGRFGPLVQIGAADDEEKPRFASLRKGQMIETISFEEAMDLFKLPKKVGEFE
EKEMTVAIGRFGPYIRHASAFYSLPKGVDPMEVSEDEAIQIIKEKRQKDIEKVIRVFEEN
AEAQIENGRWGPFIRLGKQNVKIPKGTDVDKITYEDVLKWADADPKGKAAAAKKAGAKAT
TKKATTKKTTAKKTTTKAKK
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaatttattgatagtagagtcaccggcaaaggccaaaacgatagaaggatac
ctaggaaaggattttttagtgaagtccagttatggtcatatccgcgatttagtgaaaacg
gatgacgctattgataccgaagataattttaaacaaaaatatgaggttccctccgataaa
aagtcggtagtcagtgagttaaagaagttagcgaaagaggcagagatggtttggctagca
tccgatgaggaccgcgagggggaagctatttcttggcatttgtacgaaaccttggccttg
aaagatgataagacaaagcgtattgtgtttcatgaaatcactaagcctgccatcttaagt
gcaattgagaaacctcgaaaaattgattttaacctggttaacgctcagcaggcgcgccgt
gtgctggatcgcttggtaggctttgagctgtcgcccgtgttgtggaaaaaggtgaaacca
tctttatctgcaggacgtgtacagtctgtagctgtgcgccttatcgtagagcgcgagcgc
gagatcaataggttcgaagcagaagcttcctataaaatcgtagcccaatttaccacaggt
aaggggcgcgagcagtttaaagccgagcttcctcatcgcttcgagcgtaaagaagatgca
gcgcaattcttgaatgactgtatacaagcatccttttctatcgcatcgctggagaaaaaa
ccggctaagcgttcgccatcggcaccgtttaccacctctactttgcagcaggaggccagc
agaaagctgggcttctcggtagcacgcacgatgcaggttgcgcaacgtttgtatgaagcc
ggtcgcatcacctatatgcgtacggactccgttaacttgagcgacacggctatcaacgcc
gcagagcaggagattgtaaatgcttatggcgaaaaataccacaagctacgccgctataaa
acgaaatctgccggcgcacaagaggctcacgaagccatccgcccgacttatttttcagaa
catagcatcgatggcgataatgccgagcgccgtttgtacgagcttatctggaagcgtgct
atcgcatcgcagatgagtgaggcggagtttgagaaaactaccgcgaagatcgatgtgtcc
acccgttcggaagatctagtggctaccggcgagattatgaaatttgatggcttcctgaaa
gtgtatatggaatcttcagatgatgattcggagaacacgcaagatcaggaaggtgataac
gccttgcttcctcctttggaaaaaggacaggcactatcgcttaaagcgatgaatgcaacg
cagcgcttctcgcgtccacccgcccgttatacggaggcttcattagtgaagaagttggaa
gagctgggtataggacgtccgtcgacctacgcaccgaccatatcgaccattcaaaaccgc
ggttatgtggtgaaagaagatcgtgatggccgggagcgccattatacggtattgaccatc
agcgagcagcaggtgctggaagagctgaaaacggaaacgacgggcgccgagcgttctaag
atgtttcctaccgatattggcgtgttggtcaacgatttcttggtagagcattttaacgat
atcattgattaccattttacggcaaaagtagagaaagagtttgatgagatcgcccaaggt
gataaggagtggacagcgatgctgaaggatttctacggacctttccaccacggtatccaa
gataccttagaaaatgctgatcgcgcaagccacgaacgtgaattgggcgtagatcctgca
tctggtaagccggtaaccgtgcgcgtgggccgttttggtcccttggtgcagattggcgct
gccgacgacgaggagaaaccgcgctttgcatccctgcgaaaaggacagatgatcgaaacc
atcagcttcgaagaggcgatggatctatttaagctgcctaaaaaagtgggtgagtttgaa
gagaaggagatgacggttgctattggccgctttggtccgtacatccgccatgcaagtgcg
ttctactctttgccaaaaggagtagatcctatggaggtttctgaagacgaggcgatccag
attattaaagagaaacgccaaaaagatattgaaaaggtcattcgggtatttgaagaaaac
gccgaggcgcagatcgaaaacggccgttggggaccttttatccgattgggtaagcaaaac
gtcaagattccgaaaggaacggacgtggataagatcacttacgaagacgtgttgaaatgg
gcggatgccgatccgaagggaaaagcggcggcggcgaagaaggctggcgcaaaagcgacg
accaagaaggctaccacaaaaaagacgacggctaagaagacaacgacaaaggcaaagaag
tag
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