Segatella baroniae: L6469_05790
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Entry
L6469_05790 CDS
T09580
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbao
Segatella baroniae
Pathway
sbao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L6469_05790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbao03400
]
L6469_05790 (mfd)
Enzymes [BR:
sbao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L6469_05790 (mfd)
DNA repair and recombination proteins [BR:
sbao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L6469_05790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UKK77300
LinkDB
All DBs
Position
1:complement(1363799..1367251)
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AA seq
1150 aa
AA seq
DB search
MSIQELQKLYGRLPQASALVDLFKKKSIKSLFLEGLVASSVPLLFSSIASRLKRTVVFVL
DDNDEAGYFYHDLTQIMGQEQVLFFPSSYRRAVKYGQRDSGNEILRTEVLAKLSASSADA
LFVVSYPEAIAELVVSKKRLDDHIIKLKAGQTCVLSELEQQLRSFGFEENDYVYEPGQFA
VRGSIIDVYSYSCEYPFRIDFFGNEIDTIRTFEVEDQLSKDRKTEIEIVPELAQSQTEKV
SFLKFLPEDSILVMKNLSYVHDTIDNTYQEGFSSQAMTERMEGATEQEQAQIIRDMQKDN
NLVTASTFLRDVVAFQRVEFGPNAAEVMRRQDADAQEVSSRATLQFHTTPQLLTHKNFDL
LVQNLEDYILKGYHIYILADSAKQTQRLKDIFADMDNPRAKSIVFEPVDKTIHSGFADDD
LKMCFFTDHQIFDRFHKYNLRSDAARAGKMALTMKELQEMEPGDFIVHVDLGIGKFGGLV
RVPVGNSYQEMIRIIYKNNDKVDVSIHSLYKISKYRSSETGEPPRLSTLGTGAWDRMKEK
AKKKIKDIARDLIKLYAKRKREKGFAYSKDGYMQHELEASFLYEDTPDQSKATQEVKADM
EKDRPMDRLVCGDVGFGKTEVAMRAAFKAACDGKQVAVLVPTTVLAYQHYQSFKKRLEGF
PVTIEYLSRARSTKATKAVLENLESGKVDIIIGTHKLIGKNVKWHDLGLLIIDEEQKFGV
STKEKLRKIKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELTTYGHE
VIADAINFEMSRNGQVYFVNNRISNLQEIANLIHKYVPDARIAIGHGQMKPDELEEILMG
FMNYDYDVLLSTTIVANGIDISNANTIIINEAHHFGLSDLHQMRGRVGRSNRKAFCYLLA
PPKSVLSVDARRRLEALETFSELGSGFNLAMQDLDIRGAGNLLGSEQSGFMADLGYETYQ
KILNQAITELKNDEFQDLYSDEIAGGNDKISGDDFVDDCALESDLEMYFPDNYVPGSSER
MLLYRELDRIEDDLALEEYKKRLIDRFGPVPHEGEELMQVVRLRRLGKHLGCEKIILKQG
MMQLQFVSNTQSAYYKSMSFDRVLNYVASNPRKCHFKEIKGKRMMMIDKVNSIGQATGLL
ESIDQADAKK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaatacaagaattacaaaaactttatggcagactgccccaggcgtctgccttagtt
gatttatttaagaagaagtcgatcaagtcactttttctagagggccttgttgcttcttct
gttccgcttcttttttcatcaattgcgtcaagactgaagcgtacggtggtgttcgtactt
gatgataatgatgaggctggttatttctatcacgatcttactcagattatggggcaggag
caggtgttgttctttccttcaagttatcgtcgtgctgtcaaatatggacaacgtgatagc
ggtaatgaaattttgcgaacggaagttctcgccaagttaagtgcttcttctgctgatgct
ttgtttgtcgtttcatacccagaggcaatagcagagctggtcgtttctaaaaagcggttg
gatgatcatattataaaacttaaagcagggcagacgtgtgtattgtctgagcttgagcag
caattgagatcattcggatttgaggaaaatgattatgtatatgagcctggccagttcgct
gtgcgaggcagtattatagatgtctattcatatagttgcgagtatccatttcgtatagac
ttctttggtaatgaaatagataccatacgtactttcgaggtggaagatcagttgtctaaa
gacagaaaaactgaaatcgaaattgtaccggaactagctcaatcgcaaacggaaaaagtc
tcgtttctcaaattccttccagaggatagtattctggttatgaaaaatctatcgtatgtg
catgatacaatagataatacttatcaagaaggtttttcttctcaggccatgacagagcgt
atggagggggcaacagaacaagaacaagcccaaatcatacgtgatatgcaaaaggataat
aatctggtcacggctagtactttcctgagagatgtcgtagcgtttcagcgtgtagaattc
gggcccaatgcagcagaggtaatgaggcgtcaggatgctgatgctcaagaagtatcttct
agagcaactctacagtttcatactacaccccaacttttgacccataaaaactttgacctg
cttgttcaaaatttggaagactatattcttaagggatatcatatctatattctcgctgat
agtgccaaacagacgcagcgtttgaaggatattttcgcagatatggataatcctcgagct
aagagtattgtctttgaaccggttgataagacgatacattcggggttcgctgatgacgat
cttaagatgtgtttctttactgaccatcagattttcgatcgcttccataaatataacctt
aggagtgatgctgctcgtgccggtaaaatggccctaacgatgaaggaactacaggaaatg
gagccaggtgactttatcgtgcatgtcgatttgggtataggtaagtttggcggtctcgtt
cgtgttccggtaggtaatagctatcaggagatgattcgtattatctacaagaataatgat
aaagtagatgtctctattcatagtctatacaaaataagcaagtatcgaagtagtgaaacg
ggtgagccgccacgtctttcaaccctcggaactggtgcttgggataggatgaaggagaag
gcaaagaagaagatcaaggatattgcccgagaccttatcaaactctatgctaagcgtaaa
cgtgaaaaaggctttgcttattctaaggatggctatatgcaacatgagttggaggcgagt
ttcctttatgaggatacgccagaccagtctaaggccacgcaagaagtaaaggctgatatg
gaaaaggatcgtccgatggacagacttgtctgtggcgatgtcggttttggcaagactgaa
gttgctatgcgagcagctttcaaggctgcgtgcgatggtaagcaggtagctgtgttggtt
cctactacggtattggcttatcagcattatcagtcgtttaaaaagcgtttggaaggtttt
ccggttaccattgagtatctttcaagagcacggtctacgaaagctaccaaggctgttctg
gaaaatctggagtcgggtaaggttgatattatcatcggtactcataaactgataggtaag
aatgttaagtggcacgatttaggactgttaattatcgatgaagaacagaagtttggtgta
tcaacaaaagaaaaacttcgtaagatcaaaacgaatgttgatacgttgacgatgtcggcg
actccaatacctcgtacgttgcagttctcattgatgggggctcgcgatatgagcatcatg
cgcactccaccaccaaaccgatatcctattcataccgaattgacgacttatggtcatgag
gttatagcagatgctatcaatttcgaaatgagtagaaatggacaggtctatttcgtcaat
aatcgtatcagcaatttgcaggaaatagccaatcttatccataaatatgtgcccgatgct
cgaatagcaataggtcatggacaaatgaaacccgatgaactggaggaaatcttgatgggt
ttcatgaattatgattatgatgttttgctttcaaccactatcgtggctaacggtatcgat
atttccaatgccaatacgattatcattaatgaggctcatcatttcggtttatctgatttg
catcagatgagaggtcgtgtaggtagaagtaaccgaaaagctttctgttatctgctcgcc
ccacctaagagtgtactgagtgtagatgctcgtcgtcgattggaggcactggaaacattc
tctgaattaggtagtggtttcaatttagctatgcaagatcttgatatccgtggtgcaggt
aatttgttaggttctgagcaaagcggatttatggctgatttaggttatgaaacttatcag
aagattttgaaccaggctattacagagttgaagaatgatgaatttcaggacctgtattct
gatgagatagcaggtggcaatgataagatatcgggagatgatttcgtagacgactgtgca
ttggaaagtgatctggaaatgtatttccctgataattatgttccaggaagtagtgaacgt
atgctcttgtatcgtgaactggataggatagaggatgatctggctttggaagaatataag
aagcgcttaatagaccgtttcggtcctgttcctcatgaaggtgaagagctcatgcaagtg
gtacgtttgcgtagacttggtaagcacttaggatgcgagaagattatcctaaaacagggt
atgatgcaattacagtttgtttcgaatacgcaaagtgcttactacaagagtatgagtttt
gatcgagtactcaattatgtagcttctaatccaagaaagtgtcacttcaaggagataaaa
ggtaagcgcatgatgatgattgataaggtaaatagcataggtcaagccacaggattgttg
gaaagtattgatcaagcggatgcgaaaaagtaa
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integrated database retrieval system
