Segatella baroniae: L6469_08790
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Entry
L6469_08790 CDS
T09580
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbao
Segatella baroniae
Pathway
sbao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6469_08790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbao03019
]
L6469_08790
03009 Ribosome biogenesis [BR:
sbao03009
]
L6469_08790
Enzymes [BR:
sbao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L6469_08790
Messenger RNA biogenesis [BR:
sbao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L6469_08790
Ribosome biogenesis [BR:
sbao03009
]
Prokaryotic type
rRNA helicases
L6469_08790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UKK77846
LinkDB
All DBs
Position
1:2053333..2055201
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AA seq
622 aa
AA seq
DB search
MKTFEELGVSKDICRAISELGFEHPMPVQEEVIPYLLSRESDVIALAQTGTGKTAAYGLP
VLQNTDPSTKITQTVILSPTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIGSQIRTLK
HGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEGLSKDHIT
LLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAKDKYLALKRIVDFH
PRIFGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLTQFLVATD
VAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWKVRQIEKQ
IGKEFIAGELPKAEEICKKQLYKVMNDIMKTDVDEDMIAPYMEDINRQFEYIDKEDIIKK
MVAVTFGKFLDYYKNAPEIIQPTGKSSEIRSERGGKGDRRNDRSRGPRKAEPGYRRLFIN
LGKADGFYPGEVMQFLNKNMKNRQAVGHIDLLSKFSYIEVPEKDANKVISTINGLEYKGR
EVRCNDADEAGHGRNSGRSERRGSGRKGDRHDRKNSYPKGGKKEDWRDLINKAKNVKFKD
NEPDFSEEGWAIRRPRKGNRGK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ttgaagacatttgaagaattaggtgtaagcaaagatatttgccgcgccatcagtgaactt
ggatttgagcatccaatgccagtccaggaagaagttattccatacctattaagtcgcgaa
agtgatgttattgcattggcacaaacaggtacaggtaaaaccgcagcctatggattgcca
gtattacaaaatacagacccttccaccaaaattacacagactgttattctgagtcctact
cgcgaactctgcctgcaaattgctgacgatttaaacgagtttgccaaatacatagatggc
atgcacatcgttgccgtatatggcggtacagatattggttcacagattcgtaccctgaaa
cacggtgtacaaatcattgtagcaactccaggtcgtttggttgacctgatgaatcgcggt
gtagccaagctggaaaacgttcagaatatagtacttgatgaagctgacgagatgctgaac
atgggtttctccgaaagtatcaataccatttttgaaggattgtctaaagaccatattacc
ctacttttctctgccacaatgagcaaggaagtagagcgtatcgccaagaattacctccat
aatcataaggaaatcgtagtaggcagccgtaatgaaggtgcagaacacgtaaatcacatc
tactatatggtaagtgccaaagataaatatttggcattgaagcgtatcgtagactttcac
ccacgcattttcggtattatcttctgtcgcaccaaggtagagacacaagaggttgccgat
aagctgattaaggacggatacaatgcagaagcacttcatggtgacttgagccaacagcag
cgtgaccttactatgcagaaattccgcaatcatcttacccagttcctcgtagccacagac
gttgcagctcgcggtcttgatgtagatgaattgactcacgttattaactatggattacct
gatgatatcgagagttatactcaccgaagtggtcgtactggccgtgccggtcgcaagggt
acatcaatcagtattatccatgtgaaggaaaagtggaaagtacgccaaatcgaaaagcaa
attggtaaggaattcattgctggtgagcttcctaaggcagaggaaatctgcaaaaagcag
ctctacaaggtgatgaacgatatcatgaagactgatgtagatgaagatatgatagctcca
tatatggaagatatcaatcgccagtttgaatatattgacaaggaagatatcatcaaaaag
atggtagctgtaactttcggcaaattcttagattactataagaatgcaccagagattatc
cagcctacaggaaagagtagtgagattcgctctgaacgtggtggaaaaggtgatcgacga
aacgataggagcagaggtccacgcaaagcagaacctggttatcgccgactatttatcaac
ttaggtaaagctgatggtttctaccctggtgaggtcatgcaattcttgaacaaaaatatg
aagaaccgccaagctgtaggtcatatcgacttactttctaagttctcatatatcgaagtt
ccagaaaaagatgccaacaaggttatctccacgattaatggtctagaatataagggccgt
gaggtaagatgtaatgatgcagacgaagctggacacggaagaaacagcggcagaagcgag
cgtagaggtagtggacgtaaaggtgatcgtcatgaccgtaaaaatagttacccaaaaggt
ggcaaaaaagaggactggagagatctgataaacaaagctaagaatgtaaagttcaaggat
aatgagcctgattttagtgaagaaggttgggctattcgccgcccccgcaaaggtaacaga
ggaaaataa
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