Sphingobium fuliginis KK22: H5V43_00175
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Entry
H5V43_00175 CDS
T06985
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbar
Sphingobium fuliginis KK22
Pathway
sbar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H5V43_00175 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbar03021
]
H5V43_00175 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbar03400
]
H5V43_00175 (rpoC)
Enzymes [BR:
sbar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H5V43_00175 (rpoC)
Transcription machinery [BR:
sbar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H5V43_00175 (rpoC)
DNA repair and recombination proteins [BR:
sbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H5V43_00175 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Vsr
Motif
Other DBs
NCBI-ProteinID:
QOT71648
UniProt:
A0A292ZIH7
LinkDB
All DBs
Position
1:complement(34949..39205)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTAMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPNTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTVVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSVIVPIGTLLDEALVAQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDTVKKGDRFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMEEINAKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELRQGPEAAIGDDPLAVVQGEDFTTEDME
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagatcggccttgcctctccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcccgc
atcttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtgtgcgagaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgaa
cggatgggccatatcgaactggccgcgcccgtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgtcctttat
ttcgaaagctacatcgtcaccgagccgggcctgaccccgctggagaagtatcagcttctg
accgaggacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctccgccggc
atcggcgcggaagcggtcaagcagatgctgatggacctcgaccttgagggcgagaagcag
gcgctgctggacgaactggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cggctgaaggtcgtcgagtccttcctggaatcgggcaaccggcctgagtggatgatcctg
gacgtcgtgccggtcatcccgccggaactgcgcccgcttgttcccctggacggcggccgc
ttcgcgacctcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaggccgtcgacgccctgttcgacaatggccgccgcggccgcgtcatcaccggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctctccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacattctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgcgccgacgctccaccgcctcggcattcaggcgttcgaaccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgtccacgtcccgctgtcgctggaagcccagcttgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtcccctcgcaggacatggtgctgggcatctattatctgtcgatggagcgcgaaggc
gagccgggcgaaggcatgctgctggccgacatgcaggaggtccatcaggccctctatgcc
aaggccgtcaccctgcactcgaagatcatcagccgcgtgccgcagaccgacgaagccggc
aatcagtatatgaagcgcttcgagaccacgccgggccgcatgctgctgggcgaatgcctg
cccaagtcgcacaaggtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggggacgtcatcgaccaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggcgggcatcagcttcggcaag
gacgacatggtgatcccggattcgaagaccgcgatggtcgacgaaaccaaggcgctggtg
gccgactatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaagtcgcgaacgccatgatggacgaaatc
cgcgcccagcccaaggacccgaatacgggccgcatggcgccgatcaactccatctacatg
atggcgcattccggtgcccgtggttcgcaggcgcagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctccaacttcaag
gaaggcctcaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtcagc
caggactgcaccgtcgtcgaggaggattgcggcaccgacaaggcgctggagatgaaggcc
atcgtgcagggcggctcggtcatcgcctcgctcggcgaacgaatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggttcggtcatcgtgccgatcggcacgctgctc
gacgaagcgctggtcgcgcagatcgaggccatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtctgcggcaagtgctacggccgtgacctcgcc
cgtggtacgccggtcaatatcggtgaagcggtcggcgtcatcgcggcgcagtccatcggt
gaaccgggcacgcagctcaccatgcggaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgagctgcgcgacatgccgacc
atcaccgacaagaatggccgccgcctgtcgctcgcccgcaatggcgagatcgcgatcatc
gacagcgagggccgcgagcgcgaaacgcaccgcctgccttacggcgcgaccatcctgttc
gcggatggcgacaccgtgaagaagggcgatcgcttcgctgagtgggaccccttcaccatg
ccggtgatcaccgaaaagccgggcatcgtgaagtatcaggacctgatcgacggcaagacg
ctgaccgaacagaccgacgaagcgaccggcatcgcgcagcgcgtcgtgaccgagcatcgt
gggtccgcccgcaccaaagaagaccttcgtccgcgcctcaccctgctcgacgaccagtcg
ggcgaagccgcacgctacatgctggcggtgggtgcgaccctgtcggtggacgacggcgcg
caggtgcaggccggcgacgtgctggcgcgtgtcagccgcgaagcggccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtgtcgggccgcgtccagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatccggaggatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgactatgtgaagcgcggcgacaacctgatcggtggt
tcgcccgacccgcacgacatattggaagtgctcggcatcgagccgctggccgaatatctg
gttgccgaaatccaggaagtctatcgcctgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgctgcaaaaggtcgagatcaccgtgtccggcgacaccacg
ctgctggtgggcgagcaggtcgaccgcgaggagatggaggagatcaacgccaagctccag
cccggcttccagccggcagagggcaagccggtgctgctcggcatcaccaaggcgtcgctc
cagacgcgcagcttcatctcggcggcctccttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctggtcgggctcaaggagaatgtcatcgtcggc
cgcctgatcccggcgggcaccggcgccggcatgaaccgcatgcgcgtcgccgcctcgtcg
cgtgacgcggcgatgcgggcggcgctgcgggcctccagccaggtcgacctgatcgcgccc
aagacggctgcggaagagcatgccgccgaactgcgccagggtccggaagccgccattggc
gacgatccgctggccgttgtccagggtgaggatttcaccaccgaggacatggaataa
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integrated database retrieval system
