Sphingobium fuliginis KK22: H5V43_04685
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Entry
H5V43_04685 CDS
T06985
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbar
Sphingobium fuliginis KK22
Pathway
sbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H5V43_04685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbar03400
]
H5V43_04685 (mfd)
Enzymes [BR:
sbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H5V43_04685 (mfd)
DNA repair and recombination proteins [BR:
sbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H5V43_04685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
UB2H
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QOT72440
UniProt:
A0A292ZFM7
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All DBs
Position
1:complement(990989..994453)
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AA seq
1154 aa
AA seq
DB search
MTDLQKILKASAPMTLSGVPAGFQPWLLADIARAAPSRTLFVAPDEQLMRAVADTAHYFA
PEIEIVEIPAWDCLPYDRASPSLRTAAARLAGLYALQGKPQGPQLVLTTLNALTQRTLTP
FRVRQLVAKLAPKERIAISRLADMLQANGYVRTDTVHDRGEFAIRGGIVDLFPGGEEQPL
RLDFFGDEIETVRRFDPADQRTSGSVEGFTLLPASEALLDEETIKRFRGRYREIFGATAT
GDPLYQAVSDGRRLQGMEHWLPLFEERLVPLTDHLGDDSLILLDHGVAGAAEARFEAIRD
YHANRAAAKSSDPGAYRPLEPRALYLEAEEWAALARDWPMHATTPFHEPESASVLDFAVD
GPRDFAPERAQNANVYEAVSKHIAALQRAKKKVVIASYSGGARERLSGLLADHGLKRIAA
ADSWQEALGIAAGGSTVLTVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADAFLA
ELATLSPGDLVVHMDHGIGRYEGLTQIPVAKAAHDCVALEYAGGDKLYVPVENLEVLSRY
GSESEGVSLDRLGGEAWQRRKARMKERIREIAGELLKTAAERALRPATVAEPDSAGYPAF
VDRFPYQETDDQDRAIGDVIEDLGAGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGMQVV
VICPTTLLARQHHMNFEERFRGFPVKIGRLSRLVPDKEAKAVKAGLADGTVDIVVGTHAL
LAKGLEFKRLGLVIVDEEQRFGVTHKERLKSLKTDVHVLTLTATPIPRTLQMAMSGLREL
SVIQTPPVDRLAVRTYIMPWDGVVIREALLREHYRGGQSFFVVPRISDLTEIEEFLRTEV
PEVRPVVAHGQMSATEVEERMSAFYDKRYDVLLSTTIVESGLDIPSANTLIIHRADRFGL
AQLYQLRGRVGRAKTRAYAYFTTPANRVITETAEKRLKVLSDLDTLGAGFQLASHDLDIR
GAGNLVGDEQSGHIKEVGFELYQSMLEDAILEAKAGGAGLEKARESFSPQITVDAPILIP
EDYVPDLDLRMGLYRRLNEVEDRQGLEAFAAELIDRFGKLPAPTQNLFKIIEIKQNCVAA
NIAKIDVGPKGALVSFFEDRFPRPEGLVAYIQRLNGVARLRPDSKVVVNRAWADPAARLN
GALQLSKGLAKAAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccagaaaatcctcaaagcctccgccccgatgaccctttccggcgtgccg
gccggtttccagccctggctgctggcggacatcgcgcgcgccgccccgtcccgcaccctg
ttcgtcgcccccgacgagcagctgatgcgcgccgtggcggatacggcgcattatttcgcg
ccggagatcgagatcgtcgaaatcccggcctgggactgcctgccctatgaccgggccagc
ccttcgctgcgcaccgccgcggcccggctggctggcctctacgccctgcaaggcaagccg
cagggaccgcaactcgtcctcaccacgctcaacgccctcacccagcgcacgctgacgccg
ttccgcgtgcggcaactggtggcgaaactcgcgcccaaggaacggatcgccatctcgcgg
ctggccgacatgctgcaggccaatggctatgtgcgcaccgacaccgtgcatgaccggggc
gagttcgccatacgcggcggcattgtcgacctgttccccggcggcgaggaacagccgctc
aggctcgatttcttcggggacgagatagagacggtgcgtcgcttcgatcccgccgaccag
cggacgagcgggagcgtcgagggcttcaccctgctccccgcgtcggaggccttgctggac
gaggagacgatcaagcgcttccgcggccgctatcgcgaaattttcggcgccacggccacc
ggcgacccgctctatcaggcggtgagcgacgggcgccgcctgcagggcatggaacattgg
ctgccgctgttcgaggaacggctggtgcccctgaccgaccatctgggcgacgacagcctg
atcctgctggaccatggcgtcgcgggcgcggcggaggcgcggttcgaggcgatcagggac
tatcatgcgaaccgcgcggcggcgaaatcctccgatcccggcgcctatcggccgctggag
cccagggccctctatctggaggcggaggaatgggccgctttggcgcgcgactggccgatg
cacgccaccacccccttccatgaaccggaaagcgcctccgtcctcgacttcgcggtggat
ggcccacgcgacttcgcgccggagcgggcgcagaacgccaatgtctatgaggcggtgagc
aaacatatcgccgcgctccagcgggcgaagaagaaggtggtcatcgccagctattcaggc
ggcgcgcgggaacggctgtccggattgctggccgaccatgggctgaagcggatcgcggcg
gcggacagctggcaggaggcgctgggcatcgcggccgggggcagcacggtgctgaccgtc
ctgccgctcgaccacggcttcaccgcgcccgacgtggcggtgctgaccgaacaggacatg
ctgggcgaccggctcgtgcggcgggccaagcgcaagaagagcgccgacgctttcctggcc
gaactggcgacgctctcgccgggcgatctggtcgtgcacatggaccatggcatcggccgc
tatgaagggctgacccagattcccgtcgccaaggcggcgcatgattgcgtcgcgctggaa
tatgcgggcggcgacaagctctatgtgccggtcgagaatctggaggttctctcccgctac
ggctccgaaagcgagggcgtcagcctggacaggctgggcggggaggcctggcagcggcgc
aaggcgcggatgaaggaacgcatccgggagattgcgggcgaactgctcaagaccgcggcg
gaacgcgccctgcggcccgcgaccgtggcggaacccgacagcgcgggctatcccgccttc
gtcgaccgcttcccctatcaggaaaccgacgatcaggaccgggcgatcggcgacgtgatc
gaggatctgggcgctggcaggccgatggaccggctggtctgcggcgatgtcggcttcggc
aagacggaggtcgcgctgcgcgccgccttcgtcgcggcgatggcggggatgcaggtggtg
gtgatctgcccgaccaccctgctcgcccggcagcatcacatgaatttcgaggagcgtttc
cggggtttcccggtgaagatcggccgcctgtcccggctggtgccggacaaggaggcgaag
gcggtgaaggccggccttgccgacggaaccgtcgacatcgtggtgggcacccatgcgctg
ctggccaaggggctggagttcaagcggctgggtctcgtcatcgtggacgaggaacagcgg
ttcggcgtgacccacaaggaacggctgaagtcgctcaagaccgacgtccacgtgctgacg
ctgacggcgacgcccatcccgcgcaccttgcagatggcgatgtcgggcctgcgcgaactg
tcggtcatccagacgccgccggtggatcgcctggcggtgcggacctacatcatgccgtgg
gacggggtcgtgatccgcgaggcgctgctgcgcgaacattatcggggcggccagagcttc
ttcgtcgtgccgcgcatttccgacctgacggagatcgaggaatttctccgcaccgaagtg
cccgaagtgcggccggtggtcgcccatggccagatgagcgcgacggaggtggaggaacgc
atgtcggccttctacgacaagcgctacgacgtgctgctctcgaccaccatcgtcgaaagc
gggctcgacattccgtccgccaacacgctcatcatccatcgggcggaccgcttcggcctg
gcgcagctctaccagcttcgcgggcgggtcgggcgggcgaagacgcgcgcctatgcctat
ttcaccacgcccgccaaccgggtgatcaccgaaacggcggaaaagcggctgaaggtgctg
tccgacctggatacgctgggcgcggggttccagcttgccagccacgacctcgacatacgc
ggcgcgggcaatctggtgggcgacgagcagtccggccatatcaaggaggtcgggttcgaa
ctctaccagtcgatgctggaggacgcgatactggaggcgaaggccggcggcgcggggctg
gagaaggcgcgcgagagcttctcgccgcagatcaccgtggacgcgccgatcctcattccg
gaggattatgtgcccgacctcgacctgcgcatgggcctttaccgccgcctcaacgaagtc
gaggaccggcaggggctggaggcgttcgccgccgaactcatcgaccggttcggcaagctg
cccgcgccgacgcagaacctgttcaagatcatcgagatcaagcagaattgcgtggccgcc
aatatcgcgaaaatcgatgtcggaccgaagggcgcgctggtcagcttcttcgaggaccgc
ttcccccggcccgaggggctggtcgcctatatccagcggctgaacggcgtggcgcggctg
cggcccgacagcaaggtggtggtgaaccgggcctgggccgatccggcggcgcgactcaac
ggcgcgctgcagctttccaaggggctggcgaaggcggcggcctga
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