Sphingobium fuliginis KK22: H5V43_04750
Help
Entry
H5V43_04750 CDS
T06985
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sbar
Sphingobium fuliginis KK22
Pathway
sbar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sbar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H5V43_04750 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbar03021
]
H5V43_04750 (rpoD)
Transcription machinery [BR:
sbar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H5V43_04750 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_IclR
NT_N
MerR-DNA-bind
HTH_29
Motif
Other DBs
NCBI-ProteinID:
QOT72453
UniProt:
A0A292ZFH1
LinkDB
All DBs
Position
1:complement(1007092..1009137)
Genome browser
AA seq
681 aa
AA seq
DB search
MASKANSKGAGEDTDTGDAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMSSEQ
IEDIMSALNEMGVNIVENEEASEDGEDQRDDGDDDSADDSADDDGSPRPVTEKKKETVDR
TDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNN
GEMQLREILDLDAMLSKDPAPENLEEGAEDDDGEISEKTAGPSFKEEEEPEEESADSDED
EDGLTERRARRMEEEEEEDNTLSLAQMEETLKPMALEKFATITEIFRTFSKAQESRMAAM
ANGETLSQKAEDDYQELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLA
ERHKVSRKDFLDRYVNHELDDGWLDKVSGLDKKWAAFAAAEGRAVERIRLEVSEIAQATG
MSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLH
EQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPV
DAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEA
KALRKLKHPSRSRKMRSFLDQ
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaggcgaacagcaagggtgcgggcgaggatacggataccggcgatgcaccg
ctgctggatctgaacgaggcgtcggtcaagaagctgatcgcccgcgccaagaagcgcggc
tacatcacctatgacgagctgaacgacgcgctgccgcaggaccagatgtcctccgagcag
atcgaggacatcatgtccgcgctcaacgaaatgggcgtgaacatcgtcgagaatgaggaa
gccagcgaggacggcgaggatcagcgcgacgacggcgacgacgacagcgccgacgacagc
gccgacgacgatggctcgccgcgtcccgttaccgagaagaagaaggaaacggtcgaccgc
accgacgaccccgtgcgcatgtacctgcgcgagatgggggccgtggaactgctcagccgc
gagggcgagatcgccatcgccaagcggatcgaggcgggccgcgacacgatgatcctgggg
ctgtgcgaaagcccgaccaccttcaacgcgatcatcgaatggtcgaccgcgctcaacaat
ggcgagatgcagctgcgcgagatcctggatctcgacgcgatgctgtccaaggatcccgct
ccggaaaatctggaggaaggcgccgaggacgacgatggcgagatcagcgagaagaccgcc
ggacccagcttcaaggaagaggaggaaccggaggaggaatcagccgattccgacgaggat
gaggacggcctgacggagcggcgcgcccgccggatggaggaggaggaagaggaggacaac
accctctccctcgcccagatggaagagacgctgaagccgatggcgctggagaaattcgcg
accatcacggagattttccgcaccttctccaaggcgcaggaatcgcgcatggccgccatg
gccaatggcgagacgctgagccagaaggcggaggacgactatcaggaactgcgcgagcag
ctcaccgccgaggtcgaaagcgtccagttccaccagcagaagatcgaatatctggtcgac
cagctttacgcctataaccggcgcctgaccgcgctgggcgggcagatgctgcgcctggcc
gaacggcacaaggtgagccgcaaggatttcctcgaccgctatgtcaatcatgagctggac
gatggctggctcgacaaggtgtccggtctggacaagaaatgggccgccttcgccgcagcc
gaggggcgcgcggtcgagcgcatccgccttgaggtgagcgagatcgcgcaggcgaccggc
atgtcgctgtccgaattccgccgcatcgtcaacatggtgcagaagggcgagcgcgaggcg
cgcatcgcgaagaaggaaatggtcgaggcgaacctgcgcctcgtcatctccatcgctaaa
aaatatacgaaccgcggcctgcaattccttgatcttattcaggaaggcaatatcggcctg
atgaaggcggtcgacaagttcgaatatcggcgcggctacaagttcagcacctacgcgacc
tggtggatcaggcaggcgatcactcgctccatcgcggatcaggcgcggaccatccgcatc
ccggtccacatgatcgagacgatcaacaagctggtccgtaccagccgccagttcctgcac
gagcagggccgcgaaccgactccggaggagatggccgagcggctgtccatgccgctggag
aaggtgcgcaaggtgatgaagatcgccaaggagccgatctccctcgaaacgccgatcggc
gacgaggaggattcgcatctgggcgatttcatcgaggacaagaatgcgatcataccggtg
gacgccgcgatccaggcgaacctcaaggaaaccgtcacccgcgtgcttgcctcgctgacc
ccgcgtgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccatacg
ctggaggaggtcggccagcagttcagcgtgacccgcgaacgaatccgccagatcgaggcg
aaggcgctgcgcaagctcaagcaccccagccgcagccgcaagatgcgcagcttcctcgac
caatag
DBGET
integrated database retrieval system
