Sphingobium fuliginis KK22: H5V43_06665
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Entry
H5V43_06665 CDS
T06985
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sbar
Sphingobium fuliginis KK22
Pathway
sbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H5V43_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbar03019
]
H5V43_06665
Enzymes [BR:
sbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H5V43_06665
Messenger RNA biogenesis [BR:
sbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H5V43_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
MRP-L28
Motif
Other DBs
NCBI-ProteinID:
QOT72788
UniProt:
A0A292ZEA6
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All DBs
Position
1:complement(1436450..1437835)
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AA seq
461 aa
AA seq
DB search
MQFTDLGLAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIQ
KEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE
RTTKVKLDVVPLPENFVEVVRNLPKAAPQRKGREQTPEQKTRRADGQRRYQDQQKQQRGN
TERAHRPDGEAAKPAKKNFRRRRGGSNVGAHKGAVQKTGGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgaccttggccttgccgagccgatcctgaaggcgctcgccgccaagaaa
tatgcctcgccgacgccgatccaggcgcaggccatccccgtgctgctgaagggcaaggac
ctgtgcggcatcgcgcagaccggcaccggcaagaccgctgccttcgcgctgcccagcctt
gaccatttcgcccgaaatcccaagccgacgccgctccagggctgccgcatgctggtgctg
tcgccgacgcgcgaactcgccgcgcagatcgcgcagagcttccgcgactatggccgcttc
ctgaagctgtccgtggaggtcgtgttcggcggcgtgccgatcaaccggcagatccgggcg
ctggggcgcggcgtcgacatcgtcgtggcgacgccgggccgtctgctcgacctgatcgac
cagcgcgccttcaccatcaaggataccgagatcttcgtcctcgacgaagccgaccagatg
atggacatgggcttcatccacccgttgaagcgcatcgccaagctgctgccgaaggagcgg
cagaacctcttcttctccgccaccatgccgggcgagatcgaggcgctggccagccagttc
ctgcacgatccggtcaaggtgagcgtcgcgccgcagtcgaccacggcggagcgggtccgg
cagcaggctaccttcgtcaaccagatggagaagcaggcgctgctcaacctgacgatccag
aaggaagacatcgaccgcgcgctgatcttcacccggaccaaacatggcgccgaccgggtc
gtgcgctttctggagggcgcgggcatccaggccgtggcgatccatggcaacaagagccag
gcgcagcggaccaccgcgctccaggccttccgccatggccatgtgaagctgctggtggcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtcatcaatttcgaa
ctgcccaatgtgccggaacaatatgtccaccgcatcggccgcacggcgcgggcaggggcg
gagggcgttgcgatcagcttcgtggcggacgacgagcggccttatctgaaggccatcgag
cggacgaccaaggtgaagctggacgtcgtcccgctgccggagaatttcgtcgaggtggtg
cgcaatcttcccaaggccgcgccgcagcgcaagggtcgggagcagaccccggagcagaag
acgcggcgcgccgacgggcaacgccgctatcaggaccagcagaagcagcagcgcggcaat
accgaacgggcgcatcggccggatggcgaagctgcgaagccggcaaagaagaatttccgg
cgccgtcgcggcggcagcaatgtcggcgcgcataagggcgcggtgcagaagaccggcggg
cggtaa
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