Streptomyces bathyalis: G4Z16_24345
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Entry
G4Z16_24345 CDS
T07305
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbat
Streptomyces bathyalis
Pathway
sbat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G4Z16_24345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbat03400
]
G4Z16_24345
Enzymes [BR:
sbat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G4Z16_24345
DNA repair and recombination proteins [BR:
sbat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G4Z16_24345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPP09020
UniProt:
A0A7T1T9S2
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All DBs
Position
complement(5628279..5629169)
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AA seq
296 aa
AA seq
DB search
MPYTEVEGRRLALSNLDKVLYPATGFTKGEALHYYVTVAEALLPHLRGRPVSFLRYPDGV
DSAAFFAKNVPPGAPDWVTVHEITQVSSTPLHQVLIHDLATLVWAANLAGLELHTPQWRV
EHEARADRLVFDLDPGPGAGVLECRTVALWLRERLASDDITVLPKTSGGKGLHLLAPVEV
TSSSAVSAYAKKIALEAEAAMPDLALSKMARALRPRKVFVDHSQNAAAKTTAAPYTLRAK
QQPSVSTPLTWEELSAARSAEELVFLAEQLPLRLENNGDLMAPLLDPGLVRPVPGS
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacacggaggtcgagggccgccgtctcgctctcagcaatctcgacaaggtgctc
tatccggccaccggattcaccaaaggtgaggcactgcactattacgtgaccgtcgcggag
gcgcttctcccgcatctgcggggtcgccccgtctccttcctgcggtatcccgacggtgtg
gactccgcagccttcttcgccaagaacgtgccgcccggcgcccctgactgggtgaccgtc
cacgagatcacccaggtcagcagcaccccgctgcaccaggtactcatccacgatctcgcc
accctcgtgtgggcggcgaatctcgccgggctggagctgcacacccctcagtggcgcgtc
gaacacgaggcacgggcggaccggctcgtctttgacctcgaccccggcccgggagccggc
gtcctcgagtgccgcaccgtcgcactctggctgcgggaacggctcgcgtcggacgacatc
actgtgctcccgaagacctccggcggcaaggggctgcatctgctggcaccggtcgaggtc
acctcgtcctcggcggtctccgcgtacgcgaagaagatcgccctggaggccgaggcggcc
atgcccgatctggcgctcagcaagatggcgagggcgctgcgcccccgcaaggtcttcgtc
gaccactcgcagaacgccgccgccaagaccaccgccgccccctacacgctccgcgccaag
cagcagcccagcgtctccaccccgctgacctgggaggagctgagcgcggcgagaagcgcg
gaagagttggtcttcctggccgaacaactgcccctgcggctggagaacaacggggatctg
atggccccgctgctcgatcccggtctggtccggccggttccgggctcctga
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