Shewanella baltica BA175: Sbal175_0478
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Entry
Sbal175_0478 CDS
T02014
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal175_0478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbb03019
]
Sbal175_0478
Enzymes [BR:
sbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal175_0478
Messenger RNA biogenesis [BR:
sbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal175_0478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
AEG09773
UniProt:
G0AUT9
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All DBs
Position
542373..543689
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AA seq
438 aa
AA seq
DB search
MSETHLSTQRFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFA
CEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHRKHPSGTRNLRDRSGTSRPG
AQRSGARPPRHDRTRRHS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatctatctacccaaaggtttgccgacctacctctacatcctgaggtt
aaacaggcccttgccgagaatggcttcgaattttgtacgccgatccaggcgttatcactg
cctgtattacttcaatcaaaagatatcgctggtcaagcacaaacgggcactggcaagaca
atggcctttttggtcgccacttttaatcacttattatcgactcccgtacctgaaggtcga
ctgattaatcagccccgcgccatcattatggctccgactcgcgaactggcgattcagatt
gctaaagatgcgattttactcgctaaacacactcacttaaaggtgggtattgtttatggc
ggcgaaagttacgatgtacagcgtaaagtattagatcaaggtgttgatatcttgattggt
actacgggtcgaattatcgactacgttcgccaaggcattatcggtctgaattcgattcag
gctgtagtattagatgaagccgatcgtatgttcgatctaggttttatcaaagatatccgc
ttcttgtttagacgtatgcctgaggcaaatcaacgtcttaatatgctattttcggcaacc
ttgtcgatgaaagtgcaagagctggcttacgatcatatgaacgagccagttaaagtcgaa
atcgcccctgaagaaaaaacctccaaaaacatcaaagaagaaatcttctatccttcgcaa
gaagagaagatgcgtttgttgctgaccttgattgaagaagattggccagaaaaagccatc
gttttctctaacactaagcacagctgtgaaacgctttggtcttggcttgaaggtgacgga
catcgcgtgggtttgttaacgggtgatgtgccacagaaaaaacgtattcgtattcttgag
cagtttaccagtggtcaattagatatattggttgctaccgatgttgcggctcgtggttta
catatttctgacgtatcacatgtgtataactatgatttacctgatgattgcgaagactat
gtgcaccgaatcggtcgtacgggtcgtgcgggtaacaaaggcatgtcgataagctttgcc
tgtgaagagtacgcgttgaacttgccagcaatcgaaagctatattaatcattcgattcca
gtgagtaattacgacagtgaagctttattggccgatattcctacgccagcgaagatccac
cgtaaacacccgagcggcactcgaaacctgcgtgatcgttctgggacaagtcgtccaggt
gcgcaacgcagtggtgctcgccctcctcgtcatgataggacacgtagacattcgtaa
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