Shewanella baltica BA175: Sbal175_1233
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Entry
Sbal175_1233 CDS
T02014
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
sbb
Shewanella baltica BA175
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbb03021
]
Sbal175_1233
Transcription machinery [BR:
sbb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sbal175_1233
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
IF2_N
Put_DNA-bind_N
MarR_2
Fe_dep_repress
HTH_11
HNH_repeat
Calici_PP_N
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AEG10510
UniProt:
G0APV9
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All DBs
Position
1474708..1475688
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AA seq
326 aa
AA seq
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MSRIKSTAAEALVDLSVDTVDFDLEKEEVASDLVQELGIEQQVQDDLQKNLDATQLYLGE
IGFSPLLSAEEEVYFSRKALKGCAKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGN
LGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARE
LAQKLDHEPTAEEIAEKLQVSSADVSRMLKLNEKITSVDMPLGGDNDKALLDILADDDNV
GPDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQ
IQVEALKRLRDLLGSQGLSVEALFRN
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcataaaaagcactgccgcagaagcactagtagatttatccgtagacaccgtt
gacttcgaccttgaaaaagaagaagttgcatccgatttagttcaagagctaggaatagaa
caacaggttcaagatgacctgcaaaaaaatcttgatgccactcaactttaccttggtgag
attggtttttccccactgcttagcgcagaagaagaagtttacttttcccgtaaagcctta
aaaggctgtgcaaaatcccgtaatcgcatgatcgaaagtaatttacgtctggtcgtaaag
attgcccgtcgttacaacaatcgcggcttagcactgcttgatcttatcgaagaaggcaac
ttaggcttaattcgtgccgttgaaaagtttgatccagaaagaggtttccgtttttcaacc
tatgcgacttggtggatcagacagaccattgagcgcgccattatgaatcaaactcgtaca
atccgtttgcctattcatgttgttaaagaactcaacgtttacttgcgcaccgctcgcgaa
ttagcacaaaaactcgatcacgagccaacggctgaagaaattgccgaaaaactacaagtg
tcgagtgctgatgtcagccgtatgcttaagctgaatgagaaaatcacctctgtcgatatg
cctttggggggcgataatgacaaggcgttgctggatattttagccgatgacgataacgtt
ggccctgactataaagtgcaagatgaagatatttctaattcagtggtcaaatggctcaat
gagttaaacactaaacaaagagaagtgttagcccgccgttttggtctgttaggttatgaa
ccttctacactcgaagatgtgggtgctgagattggtttgactcgtgaacgtgtacgtcaa
atccaagtggaagcattgaaacgtttacgcgacttattaggatctcaaggtttatctgtt
gaagcattatttcgaaactaa
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