Shewanella baltica BA175: Sbal175_1976
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Entry
Sbal175_1976 CDS
T02014
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sbal175_1976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbb03400
]
Sbal175_1976
Enzymes [BR:
sbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal175_1976
DNA repair and recombination proteins [BR:
sbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sbal175_1976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
TraI_hel_assoc_N
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEG11246
LinkDB
All DBs
Position
complement(2340419..2343916)
Genome browser
AA seq
1165 aa
AA seq
DB search
MTHISALTPPAVKNGNQIQTLSTVGGVCQAVTLASLARQHKGTTLVVTSDTPSALSLELE
LSYLLSKTGIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQLSQIEQNIVIVPVTTLMM
RLPPKAYLSANVFVLKKGDSYKLHDVRQHLTDTGYHSVEQVYEHGEFAIRGSILDIFPTG
MNMPLRIELFDEEVETIRHFDPETQRSLQPVDSIRLLPAKEFPTDSSAIEGFRQRYRRRF
EVIVKEPESVYQLVSRSLMPAGIENYLPLFFDDTATLFDYLPKDTQLVTLGDIEKSARAH
LQEVEHRYQDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQMHVPTDGTETTKAVVIA
ASTLPDISANHKLKQPLLALQDYASSAKRMLFSAESEGRREALLELLAKIQLKPVLFNHF
DEFIQSDAKLGLIVSPLSRGCLLQISAKDGISIICETELFGHRISQQRRREKQRQISNDA
LIKNLAELKVGQPIVHLEHGVALYKGLVTLDTGGLVAEYLQLEYAGGDKLYVPVSSLHLI
SRYSVGADEDAHLNKLGNETWAKAKKKAIEKIRDVAAELLDVYARRQSRPGESCEIDEEE
YAQFARGFPFEETVDQESAIIAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNAG
KQVVVLVPTTLLAQQHYENFKDRFADWPVVTEVMSRFRTAKEQTQVLQQLEEGKVDIVIG
THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSG
MRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVESIEKCAQGI
IDLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERAD
TFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTPDARKRLEAIDALEDLGAGFMLATQD
LEIRGAGELLGDEQSGHISKIGFSLYMEMLEAAVKALKQGKEPSLAQMLNQQCEIELRIP
ALLPEAYVSDVNIRLSLYKRIAGCETEAALDELKVELIDRFGLLPEPTRNLMEMTLYKHE
ATRLGATKIEVHSKGGSIEFSHDHVIDPMFIIGLLQSQPQIYRMEGPNKLKFSLAAETSK
DRLALVKLLLEQLSQHQSQHRLGDK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatatcagccctaacgccgccagccgtcaaaaatggcaatcaaattcagact
ctgtccaccgtgggcggcgtttgccaagccgttacactcgccagtttagcgcgtcaacat
aaggggacgaccttagttgtcaccagtgatacgccaagcgccttaagcttagagctagaa
ctgagttatttactcagtaaaacaggcattaaggtcagattattccctgaccgcgaaacc
ttgccctacgacagtttttcgccccatcaggatttgatctcccagcgactcgaaaccctg
tcgcagctgtctcaaattgagcaaaacatcgttatcgtgcccgtcacgaccttgatgatg
cgcctgccacctaaggcctatttgagcgccaacgtgtttgtgctgaaaaaaggcgacagc
tacaagttacacgatgtacgccagcatttaaccgacactggctaccattcagttgaacaa
gtgtatgaacacggcgagtttgccattcgcggctcgattctggatatcttccccactggg
atgaatatgccactgcgcatcgagctattcgatgaagaagtggagaccatccgccatttt
gatcccgaaacccaacgttcattgcaacctgttgactcgattcgcttattgcccgcgaag
gaatttccgaccgacagctctgccatcgaaggctttagacaaagataccgtcgccgtttt
gaggtcatagttaaagagccggaatcagtttatcagctggtgagccgcagcttgatgccg
gcggggattgaaaactacctgccgctgttttttgatgacacagcgaccctattcgattac
ttgcccaaggacactcagttagtcactttaggggatatcgaaaagtcggcgcgcgcgcat
ttgcaagaagtcgaacatcgctatcaagacagacgagtcgatccactgcggccgctactg
gcgcctaaagagctgtatttactcattgaagagttatttgccgcctttaaaccgctgcca
cgttatcaaatgcacgtgccgacagatggcactgaaacgacaaaagctgtggtgattgct
gccagcaccctgcccgatatcagcgccaaccataaattaaagcaaccactgttagcgctg
caagattacgccagcagcgccaaacgcatgttgtttagcgctgagtccgagggtcgccgc
gaagcgctgcttgaattgctcgctaaaattcagcttaaacctgtgctatttaaccatttt
gatgaatttattcaaagtgatgccaagttaggccttatcgtgtcgccgctgtcacgcggt
tgtttgctgcagatcagcgccaaagatggcatcagtatcatttgtgaaactgagctcttc
ggccatcgaatttcccagcaacgtcgccgtgaaaaacagcgtcagatcagtaacgatgcc
ctgattaaaaacttggccgaactcaaagtcggtcagcccattgtgcatttagaacacggt
gttgccctctataaaggcttagtcaccctagatacgggtggactggtcgccgaatacctg
caattggaatacgccggcggcgataaactgtatgtgccagtgtcttcattgcaccttatc
agccgctacagtgttggcgccgacgaagacgcccacttaaataaactcggcaatgagacg
tgggctaaagccaagaaaaaagccattgaaaaaatccgcgatgttgcggccgagctgctt
gatgtctatgcccgtcgccaatcccgtcccggcgaaagctgcgagattgacgaagaagaa
tacgcccaattcgctcgcggtttccccttcgaggaaaccgtcgatcaagaaagcgcaatc
atcgccgtgttagccgatatgcaatcgccaaccgcaatggacagactagtctgtggcgat
gtgggctttggtaaaaccgaagtcgccatgcgcgccgcctttgtggccgtcaacgccggt
aaacaagtggtcgtgctagttccgaccacattgcttgcccagcaacactatgaaaacttt
aaagatagatttgccgactggcccgtggtcaccgaagtgatgtcacgctttcgtaccgcc
aaagagcagactcaagtgctgcagcaattggaagaaggcaaagtcgatatcgttatcggt
acccacaagttattgcaatctgaggccaagtttgaaaacttaggcctactgatcatcgac
gaagaacacagattcggtgtgcgtcagaaagagaaaatcaaggcactgcgtgccaacgtg
gatatcctaactctgaccgcaacgcctattccacggaccttaaatatggccatgtcgggc
atgcgcgatttatcgattatcgccaccccgcccgccaaacgtttagcggtaaaaaccttt
gtgcgcgagtccgatcctgcaaccgtgcgcgaggccattttgcgggaaattctccgtggc
ggccaagtgtattacctgcacaataatgttgaaagtattgaaaaatgtgcccaaggcatt
atcgatttactgccagaagcgcgggtagtcgtcgcccacggtcaaatgcgtgagcgcgat
cttgagcgggtgatgtctgacttttatcaccaaagattcaacgtgctagtttgtactact
attatcgaaactggtatcgacgtcccgagtgccaacaccattattattgagcgcgccgat
acctttggtctggcgcagttacaccaattacgcggccgcgtcggacgctcgcaccatcag
gcctatgcctatttgatgacgccgcatcccaaacgcatgaccccagatgcgcgtaagcgt
ttagaagccattgatgcccttgaagatctcggtgcaggctttatgctggcgacgcaggat
ttagagatccgcggcgcaggtgaactcttaggtgatgagcagagcggccatatttcaaaa
attggttttagcttatacatggaaatgctcgaagcggcagtcaaagctttaaaacaaggc
aaagagccatcgctggcgcaaatgctcaatcagcaatgcgagattgaactgcgtatcccc
gccctgctgcctgaggcctatgtgagcgacgtgaatattcgtctatcgctctataaacgc
attgctggttgcgaaaccgaagcggcgctggatgagttaaaagtcgaattgatcgaccgt
tttggcctattgcccgaaccgacgcgcaacttaatggaaatgaccctctataaacatgag
gcgactcgcttaggggcgactaaaatagaagtgcacagtaaaggtggcagcatcgaattt
agtcatgatcacgtcatcgatcctatgtttattattggattactccaaagccagccacaa
atctatcgaatggaaggaccgaataagttaaagttcagccttgcagccgaaaccagtaaa
gacaggctcgcattagtgaaactcttgctcgaacaactatctcaacatcaatcgcaacat
cgtcttggagataaatag
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