Shewanella baltica BA175: Sbal175_2446
Help
Entry
Sbal175_2446 CDS
T02014
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sbb
Shewanella baltica BA175
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbb03019
]
Sbal175_2446
Enzymes [BR:
sbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sbal175_2446
Messenger RNA biogenesis [BR:
sbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sbal175_2446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
NACHT
T2SSE
HA2_N
NTPase_1
AAA_23
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEG11697
LinkDB
All DBs
Position
complement(2896444..2900319)
Genome browser
AA seq
1291 aa
AA seq
DB search
MNSDKHPLSNAFLNLCYQADASRIRRRLFKLNKEADSDKKTQVLAQLSEQAHAAFEKVEQ
RRNARPKIQYPENLPVSLMRDDIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGCRG
MIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSDSYIKLMTDGILLAELT
SDRNLDQYDTIIIDEAHERSLNIDFILGYLKQILKRRPDLKVIITSATIDVERFSKHFNN
APIIEVSGRTFPVETRYRPLVQDSDADLDQIEGIFAAVDELVAEGLGDILIFMNGEREIR
DTAEQLSRRNYRDTEILPLYARLSYGEQSKVFSSHRGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPAFT
DPEILRTNLASVILQMLAIGLGDIAGFPFIEPPDPRHIRDGFLLLEELQAVESKHGKLVL
TPLGRNLAQIPVDPRLARMVVESQQLGCLNEVLVIAAGLSIQDPRERPMEKKQASDEAHR
RFADPSSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYAQLKQAVH
DLKWRLNDTPPSYDTLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGPKW
IMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLYGL
TVVHRRKVQYGPIDPVEAREIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRRRD
ILVDEQVLVDFYEPRIPEGIYNAQLFFGWWKKAKREQPDLLDFSKALLMQRNADHISTLD
FPDTWHKGNLRLQLSYHFEPAAADDGVSVHIPVALLNQIDDSDFDWLVAGLREEKCIALI
KSLPKSLRRNFVPAPDYARACVQAMVPFSACLLEAMCKQLLRMSGTRISPEDFDLTQLPA
HLQMNFKIEDDKNNLVAEGRVLDTLKAELQGVVAKAIRQVADKGIEQEALTEWSFGDLPQ
QYQQQKGNYQVRAFPALIDKKDSVAIKLFDDEFEALDAHRQGLRRLLLLNIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRNQTQFEQAKDWVRQELNP
TAEQIALKVEQILTLYQSIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVESCGWNRLA
DVARYLKAIEIRVEKLPVDPTRDRLHMQSINKVQEALNAQLAKVPRSQPTPPALIEARWM
IEEYRVSCFAQVLGTAYPISEKRILNHIQQV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaactcagacaaacatccgctatcgaacgcctttcttaatctttgttatcaggctgat
gcgtctaggatccgtcgtcgtttatttaagctcaataaagaagccgactcagataaaaag
acccaagtcttagcccagctgagtgagcaagcgcatgcggcgtttgagaaggttgagcag
cgccgtaacgctcgccctaaaatccaatatcctgaaaaccttcccgtttctttgatgcgc
gatgacattgcgcgcgcgattgcgggcaatcaagtggtgatcattgccggtgaaacgggc
tcaggtaaaaccacacagctccccaaaatttgtttagaactcggcttaggttgccgtggc
atgattggccacacccagccaagacgattggctgcccgcagcgtggcgagccgagttgct
gaagaattacaaagcccgctcggtgaagtggtcggctttaaagtgcggtttgccgatgcg
cttaagagtgactcgtatattaagttgatgaccgacggtattttactggcggaattgacc
tcagatcgcaatctcgaccaatacgataccatcatcatagatgaggcccacgagcgcagc
ctcaacatcgattttattctgggctaccttaaacagatccttaaaagacgccccgatctc
aaagtcatcatcacgtcggcgaccatagacgttgagcgtttttctaagcatttcaacaat
gcgccgattatcgaagtgtcgggccgtacctttccggtcgaaacccgttaccgaccctta
gtgcaagatagcgatgccgatttagatcaaattgaaggcatttttgccgccgtcgatgag
ctggtggccgaagggctgggcgacattctgatctttatgaacggcgagcgggaaattcgc
gatacggccgaacaattaagtcggcgtaattaccgcgataccgaaattttgccgctgtac
gcgcgtttgtcctatggcgagcagtccaaagtcttcagtagtcacagaggtcggcggatt
gtactagcgacgaacgtggcggaaacttcgctgactgtgccgggcattcgctacgttatc
gacccaggtacagcgcgtatcagccgttatagttatcgcactaaggtgcaacgtttaccg
atagaacctatctcgcaggcgagcgccaatcagcgccaaggccgttgtggtcgtgtggga
ccgggtatttgtattcgtttgtacgatgaggcggattttaataatcgtccggcgtttacc
gatcctgaaattctgcgcactaacttggcatcggtcattttgcagatgctcgccatcggt
ttaggtgatattgctggcttcccgtttatcgagccacccgatccacgccatatccgcgat
ggtttcttgctgctcgaagaattacaagcggttgagagcaaacacggcaagctcgtattg
acgccacttgggcgtaatttggcgcaaattcctgtggatccgcgtttggcgcgtatggtg
gtcgaaagtcagcagttaggttgtttgaacgaagtgctggtgattgcagccggattatcg
attcaagatccccgcgagcgtccgatggagaagaagcaagccagtgatgaagcccatcgt
cgttttgccgatcccagttccgatttcgttagttggattaacctgtggcagcacttaaaa
gatcaacaaaaagagttatctgctagtcagttccgtaaaaagtgccgcgatgagtatttg
gcctatttgcgcgttcgcgagtggcaggatttatacgcccagcttaaacaagccgtgcac
gatttaaaatggcgcttaaacgatacgcccccaagttacgataccttgcaccgtgcgctg
ttgtcgggcttgttgagccatgttggttttaaagataacaataacgagtatttaggtgcg
cgtaatcgtaaattctttgtgtttcccggttcgccattggccaaaaaaggcccaaagtgg
attatggccgctgagcttaccgaaacttcgcgcttattcgcccgctgctgcgccaaaatt
gaacccgaatggctagagcccttagcggcgcatttgattaagaaaagctatgtagagccc
cattttgaggcaaaacctggcagcgttatcgcccttgagaatcaagtgctctacggcttg
acggtcgtgcaccgccgcaaagtgcaatacggccccatcgatccagttgaagcgcgtgag
atttttatccgcagcgccttggcagaagggcagttgcaaacccaagaagcgttttttgtc
gctaaccaaaagctgctcgaagacattgaatcacttgagcataaatcccgtcgccgcgat
attttggtggacgagcaagtgttggtggatttttacgaaccgcggatccctgaagggatt
tacaacgcccagctgttttttggctggtggaaaaaagccaagcgcgagcaaccagattta
ctcgatttcagcaaagcgttgttaatgcagcgcaatgccgaccatatttcgaccttggat
ttccccgatacgtggcacaagggcaatttgcgcctgcagctgagttatcactttgaaccc
gctgcggcggatgacggcgtgtcggtgcacattccggtggcgctgctcaatcaaatcgac
gatagcgattttgattggttagtggctgggctgagggaagaaaagtgcatcgcgctgatc
aaatctttgcctaagagtttacgacgtaactttgtgcccgcgcctgactatgcccgtgct
tgtgtgcaggccatggtgccttttagtgcctgtttgcttgaggccatgtgcaagcaattg
ctgcgcatgagtggcacacgcatatcgccggaagattttgatttaacgcaactgcccgcg
catttgcagatgaactttaaaatcgaagacgataaaaacaacttagtcgccgaagggcgc
gtgctcgataccttaaaagccgagttgcagggcgtggtggcgaaggccattcgtcaggtg
gcagataaaggtatagagcaagaagcgttaactgagtggtcttttggtgatttgccgcag
caatatcagcagcaaaaaggcaattaccaagtacgggcgtttccggcgctgatcgataaa
aaagacagtgttgcgatcaaattatttgatgatgaatttgaagccttagatgcccatcgc
caaggtctgcgacgcttgttgctgttaaacattccatcaccggtgaaacatttgcagcaa
gctttgccgaataaggcgaaattggcgatgtatttcaatccttttggtcaagttcagatc
ttgattgatgacataattgccgccgctgtacagcaattattggatgaaaaagccctcgat
gtgcgtaatcaaacccaatttgagcaggcaaaggattgggttcgccaagagctcaacccg
acagctgagcaaattgccctgaaggttgagcagattttgaccttataccagagcattaaa
aagcgtctcaagggcaaaattagcttagatatcgcttttgctatgagtgatattcaaagc
caattagacaaattagtgtttaaagggtttgttgaatcctgcggttggaatcgtttagcc
gatgtggcgcgttacttaaaagcgattgaaatccgtgtcgagaagttacctgtcgatcca
actcgcgaccgtttgcatatgcagagtattaacaaggtgcaggaagcattgaatgcacaa
ttggcgaaagtgccgcgatcgcagccgacaccgcccgcgttaattgaagcgcgctggatg
attgaagagtatcgcgtctcctgttttgcgcaggtgttaggcacggcttatccgatatcg
gaaaaacgcattttgaatcatatccaacaggtctaa
DBGET
integrated database retrieval system
