Shewanella baltica BA175: Sbal175_3428
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Entry
Sbal175_3428 CDS
T02014
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03410
Base excision repair
sbb03430
Mismatch repair
sbb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sbal175_3428
03430 Mismatch repair
Sbal175_3428
03440 Homologous recombination
Sbal175_3428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbb03400
]
Sbal175_3428
DNA repair and recombination proteins [BR:
sbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sbal175_3428
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sbal175_3428
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sbal175_3428
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Kbp-5
Motif
Other DBs
NCBI-ProteinID:
AEG12662
UniProt:
G0AZQ2
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All DBs
Position
complement(4066916..4068640)
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AA seq
574 aa
AA seq
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MIHKIVRRPTVDDSHLPAHLSPLLKQLYARRGALSHECELVLKGLLRPETMKGLPEAAAL
IADAMQANKSILIVGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVA
VAASKQAEMLITVDNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCP
FASKSIAGVGVAFYLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLQRVRAGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCEDMMYARRMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQE
DWHQGVIGILASRIKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLI
IKFGGHAMAAGLSLKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQ
LLRNAGPWGQAFEEPLFDGYFTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWP
DATIRHARIVYKLDVNEYRGNFSLQLMVEQIEAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgatccataagatagtccgtcgcccaaccgttgatgatagccatttacctgctcatctt
tcgccgctattgaagcagctttacgctcgccgcggtgcgctcagccacgaatgcgaactt
gtccttaagggtctattaagacctgaaaccatgaaaggcttacccgaagctgcggcgctt
attgccgatgccatgcaggcgaataagtcgattttgatcgtcggtgattttgatgccgat
ggcgcgacctcaaccagcgtatgtatgctggcgctacggatgatgggcgcggtgaaagtg
gattatttgatccccaatcgcttcgattacggctacggcttaagccctgaaattgttgcg
gttgcggcctctaaacaggctgaaatgctgatcactgtcgataacggtatttcatcgatt
gatggcgttgctgcggccaaagcctttggtatgcaagtggtaattactgaccatcattta
cccggacacgagttgcctgctgccgatgcgatagtgaatccgaatcaacccgattgccca
ttcgcgagtaaatcgattgccggtgtcggtgtcgccttttatttgatgacagcattaagg
gctgaactgcgaacgcgaaactggtatcaaacgcgcggtattgctgagcccaatctcggg
acgctgctcgacattgttgccctcggtaccgttgccgatgtggtatcgctggatgccaat
aaccgcattttagtcgaagcgggtttgcagcgcgtgcgagcgggccgctgccgtgtgggg
attaccgcactgcttgaagtcgcgaaacgcaaccccgcgcgtattgttgcttccgacttt
ggttttgctgtgggcccaaggcttaatgccgcaggccggctggatgaaatggcgcttggg
gtcgaaaccttactctgtgaagacatgatgtacgcgcggcgtatggcggccgagctcgat
gggttaaaccaagagcgtcgtgagctggaagtcggcatgcagcaggaagccttaaaaagc
cttgagcacttaaagctcaacgaagacgagttaccttggggtatcgcgctatttcaagaa
gattggcaccaaggcgtcattggtattctggcctcgcgcattaaagacaaataccacaga
cccgtgatcgcctttgccgatgccggcaatggtcaaattaaaggctcggcgcgttcaatc
aaaggcttgcacatgcgcgacttgctggagctggtcaacacgcgccacccaggactgatt
atcaagtttggcggccatgctatggctgcgggcttatcactcaaagccggcagttttgcg
acatttgccaaagcctatgatgatgcggtgcgtgaactgctcaaacctgaactgctaact
ggcgagctgtggtccgatggtgaactcactcccacggaactgaatcttgagatggcccag
ttactgcgcaatgcgggaccttggggacaagcttttgaagagccattgtttgatggctat
tttacgatagtgcagcaacgcctcgtcggtgagcgccatcttaagcttgtactcgaaacc
cagtgcggcactgtgatgctcgatgcgattgcctttaatgtggatttgcacacttggccc
gatgcgaccattcgccatgcccgtattgtttataagcttgatgtgaatgagtatcgcggt
aatttctcgctgcaactcatggttgagcagatcgaagctatgtag
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