Shewanella baltica BA175: Sbal175_3856
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Entry
Sbal175_3856 CDS
T02014
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal175_3856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbb03019
]
Sbal175_3856
03400 DNA repair and recombination proteins [BR:
sbb03400
]
Sbal175_3856
Enzymes [BR:
sbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sbal175_3856
Messenger RNA biogenesis [BR:
sbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal175_3856
DNA repair and recombination proteins [BR:
sbb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Sbal175_3856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AEG13079
LinkDB
All DBs
Position
complement(4566029..4567852)
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AA seq
607 aa
AA seq
DB search
MEKLVLDTHDDPLSQRLAQVFGYRDFRDGQREVIERVCGGQDCLVIMPTGGGKSLCYQLP
ALLMDGITIVVSPLISLMKDQVDSLLQTGVAAAYLNSSLPREQSAEVLRQLRHGELKLLY
VSPERLLSADFIERMQSLQLAMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPYVPMMAL
TATADQATRQSICERLGIDPFRLLSSFDRPNIRYTVAEKLNAANQLRHFLTQQNGTNGII
YCSSRRRVDEVADRLCLQGFNAKAYHAGMTQEDRGAVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLDAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDARKVLS
CIFRLGQRFGINHLIEVLRGSKGAPIVDRGHDKLTTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDVTRGSSITLNPSARPVLKGEVALMLAEPRIQLTTTKRKVSQSKAPLNYDRKLFARL
KLLRRTIAEQQDVPPYLVFNDATLAEMAAMMPTSAGEMLAVNGVGERKLSRFGDAFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcgtactcgacacgcatgatgatccgctctcgcaacgcctcgcacaggtg
tttggttaccgtgactttagggacggtcagcgggaggtgatagaacgtgtctgcggcggg
caagattgcttagtgatcatgccaacgggcggcggtaagagtctttgctatcaactcccc
gcgttgctgatggatggcattacgattgttgtatctccattgatttctttgatgaaagat
caagtcgatagcttgttgcaaaccggtgttgcagcggcttatctcaattcttcattgccg
cgagagcagagcgccgaagtattaaggcagctgcgccacggtgagttaaaactgctttat
gtgtcaccagagcgcttattaagcgcagattttattgagcgaatgcagtcgttgcagcta
gcgatgtttgccatcgacgaggcgcattgtatcagtcaatggggtcatgattttcgccct
gaatatgcggcgctcggccagttaaagcaactcttcccctatgtgcctatgatggcgctg
acggcaacggcggatcaggcgactcggcagagtatttgcgagcgacttgggattgacccg
ttccgtttactctcgagtttcgataggcctaatattcgctacacagtggcggaaaagctc
aatgctgcgaatcagttacggcattttttaacccagcaaaatggcaccaacgggattatt
tactgtagtagtcgtcgccgtgtcgacgaagtagccgatcgtttatgtctgcaaggtttt
aatgctaaggcctatcatgcgggaatgacgcaggaagatcgtggcgcagtgcaggacagt
ttccttaaagatcaaatcgatatcgttgtcgccactgtggctttcggtatggggatcaat
aaatcgaatgtgcgctttgtggtgcattacgatattcctaaaagtatcgaagcctattat
caggaaacgggccgagcgggccgtgatgggcttgatgccgaggcctttatgttgtttgat
cctgccgatattggccgggtgcgacatttgattgaacagtctgagcccgggccgcagcag
caagtcgaattccataaactcaataccatggcggcgtttgccgaggcgcaaacctgccgt
cgccaagtgttgctgcattactttgatgagagcgcactagagccctgtggcaactgcgat
atttgcctcgatccgcctaagcgttataacggcaccgaagatgcacgaaaggtgttgtca
tgtattttccggttaggccagcgttttggtattaatcacttgattgaagtgttgcgcggc
tcgaaaggcgccccgattgttgaccgaggccatgacaaactcacgacttgggggattggt
aaagacaagagccatgagtattggttgagcgtgatccgtcaattgatccacttgggactg
gcgagtcaggatgtgacgcgaggttcatctataaccttaaacccatcggcacgacctgta
ctcaaaggtgaggtggcattaatgctcgccgaaccgcgcattcagttaacgaccacaaaa
cgcaaggtgagccagtctaaggcgccgctgaactacgaccgtaagctattcgcgcgactc
aagttactgcgaagaaccatagctgagcagcaggatgtgccaccgtatttagtgtttaac
gatgcgacgctggcggaaatggcggccatgatgccgaccagtgcaggggaaatgctcgcc
gttaacggagtgggcgagcgtaaactgagtcgtttcggcgacgcttttctcgatgaaatc
gcggcttatttagcgggagaataa
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