Shigella boydii CDC 3083-94 (serotype 18): SbBS512_E1633
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Entry
SbBS512_E1633 CDS
T00700
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sbc
Shigella boydii CDC 3083-94 (serotype 18)
Brite
KEGG Orthology (KO) [BR:
sbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbc03019
]
SbBS512_E1633 (hrpA)
Enzymes [BR:
sbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SbBS512_E1633 (hrpA)
Messenger RNA biogenesis [BR:
sbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SbBS512_E1633 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ACD06841
UniProt:
B2U128
LinkDB
All DBs
Position
1486110..1490012
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQDIFQEMAKEIDPAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttactgctttgcagcagcggctggattcgttgatg
ctgcgcgacagactgcgtttttctcgccgtctgcatggtgttaagaaggttaaaaatcct
gatgcacaacaggacattttccaggagatggcgaaagagattgacccggcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaatcacttatccggacaatttgccagttagt
cagaaaaaacaggatattctcgaagcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaaccggttccggtaaaacgacccagctaccgaaaatctgtatggagctggggcgcggg
attaaaggactgatcggccatacccagccgcgtcgtctggcggcaagaacggtggcgaac
cgtattgcggaagagctgaaaacggagccaggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcacac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttctcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggcgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaatagcgaacagaaccgcgtgttccagtcgcacagc
gggcgacgcattgtgctggcgaccaacgtcgcggaaacctcgctgactgtaccggggatt
aaatacgttatcgaccccggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgaacccatttcacaggcgtctgccaatcagcgtaaaggccgttgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcaactgccggtcgatcct
cgtctggcgcgtatggtgctggaagcgcagaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggacccgcgtgagcggccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgtcaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtatcgc
gaaattcacattgcgttgctgacgggtttactttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttgatt
aaacgtacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgcagcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccatgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgctgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgtcacttcgatagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagccaggcgcagacgcggacggtgtgaccgtacatattccgctg
ccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgccgc
gaattggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtgcct
gcaccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctgtccgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagctgccggaaagttacgaacagaagcgtggcaactataaagtgaaggcg
tggccggcgctggtggatgaacgcgacagcgtggcgatcaaactgtttgataacccgctg
gagcaaaaacaggcaatgtggaatggtcttcgccgtctactgctgctaaatattccctcg
ccgatcaagtatttacatgaaaagttaccgaacaaagccaagctgggactgtacttcaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgagaaa
gtgcgtgccgaactgaacgacacggtggtagatattgcgaagcaggtcgagcaaattctt
acggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcactg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgactg
gaaaaactggcggttgatccacatcgcgatcgtgcacagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
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