Shigella boydii CDC 3083-94 (serotype 18): SbBS512_E2064
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Entry
SbBS512_E2064 CDS
T00700
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbc
Shigella boydii CDC 3083-94 (serotype 18)
Brite
KEGG Orthology (KO) [BR:
sbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbc03016
]
SbBS512_E2064 (rnd)
Enzymes [BR:
sbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SbBS512_E2064 (rnd)
Transfer RNA biogenesis [BR:
sbc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SbBS512_E2064 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACD10180
UniProt:
B2U439
LinkDB
All DBs
Position
complement(1875957..1877084)
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AA seq
375 aa
AA seq
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MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI
TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILSAFCGRPMSWGFAS
MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL
DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVEKVQTLPEEALPQPMLNLMDM
PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWRLKPQNNLPELISGWRGE
LMAEALHNLLQEYPQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgt
gcctttccggcgatagccctggatactgaatttgttcgtacgcgcacttattacccgcag
ctggggttgattcaacttttcgatggcgagcatctggcgctaattgatcctctcgggatc
accgactggtcaccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccat
gcaggcagtgaagatctggaagtgttcctcaatgtctttggcgaattaccacaacccttg
attgacacgcaaatcctttctgccttctgcggacgcccgatgtcatggggtttcgcttcc
atggtggaagagtattccggcgttacgctggacaagagtgaatcgcgcaccgactggctg
gccagaccgctgaccgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgtta
ccgatcaccgccaagcttatggtagaaacggaggcctccggctggctacctgcggcgctg
gatgaatgccgcctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctgg
cgtgatatcaccaatgcctggcagttacgcacacgccaactggcctgtctgcaactgtta
gccgactggcgactgcgcaaggcgcgagagcgtgatctggcggtgaactttgtcgtgcgt
gaagagcatttgtggtcggtcgcgcgttatatgccgggaagtttaggcgaactggacagc
ttgggtttatccggtagcgaaatccgctttcacggtaaaacgctgctgacgctggtggaa
aaagtgcagacattgccggaagaggccttaccgcagccgatgcttaacctgatggacatg
cctggttatcgtaaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacg
cataagatcagcgccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactgg
cactggagactgaaaccgcagaacaatttgccggagctgatttccggctggcgtggtgag
ctgatggcggaagcattacacaatttattgcaggaatatccgcagtaa
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