Sphingobium wenxiniae: ATN00_00240
Help
Entry
ATN00_00240 CDS
T04194
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sbd
Sphingobium wenxiniae
Pathway
sbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATN00_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbd03019
]
ATN00_00240
03009 Ribosome biogenesis [BR:
sbd03009
]
ATN00_00240
Enzymes [BR:
sbd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ATN00_00240
Messenger RNA biogenesis [BR:
sbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATN00_00240
Ribosome biogenesis [BR:
sbd03009
]
Prokaryotic type
rRNA processing factors
ATN00_00240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ALR18978
UniProt:
A0A0S3EUD4
LinkDB
All DBs
Position
46586..49261
Genome browser
AA seq
891 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRAEVDDDEEGLTGEDGVEVIV
ATHHEDDEGGEDAETDEGGDKPARRGRGRGRGGDEAADELRRKRMALRRRYKIQDVIKRR
QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIIA
DMALPSTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLNSAAPALIHNDSDLIKR
AIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQLAA
MYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLR
DMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVL
EASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGSIVTLRASQEAAFYVLNNKRR
ELDEIEQRYGVTIVILPDGEVEGARMSVEASGPRPERVVSYAPLAEEEDDLDVIEEEEEE
SEEEETSSEREERGEEREGGRRRRRRRRRRGGPRDEQDSQAAADGSEEAEGEADVDADAG
EDIAEAAAGEGADEGEAGRKRGRRGRRGGRRRREAGEAEAGDAASETAEAVEAVENAPEA
EPVVAPDAAAAVEPVAEEAPKTRRRPRARKVKEAVAEPAATENAEPVAQAPVEEPVTEAA
PAKPKRTRRKKPAASDAETADTVIVAEAPAVETEAEAKPKPKRTRRKKADAAVEEIAAEV
APEAAAEVIEPIAAQAAPETVAASVEGAETAEGEEENGSPRRGWWQRTFGQ
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtcaagggaaaccgg
atcgaggagtttgacttcgagtccgccgagcacaagcagctcaagggcaatatctatctc
gccaaagtcacccgcgtagagccctcgctccaggcggcgttcgtggattatggcggcaac
cgccatggcttcctcgccttttcggaaatccatcctgactattaccagatcccgcgcgaa
gaccgcgaggcactgctgcgcgaggaacgcgcccatgcggaggaagaggccgcgctgcgc
gccgaggtcgatgacgatgaagaggggctgaccggcgaagacggcgtggaggtcatcgtc
gccacccatcatgaagatgatgaaggtggcgaggatgccgaaaccgacgaaggcggcgac
aagcctgcgcgccgtgggcgcggcaggggccggggcggcgacgaggctgccgacgagctg
cgccgcaagcgcatggcgctgcgccgccgctacaagatccaggacgtcatcaaacgccgc
caggtactgctggtgcaggtcgtcaaggaggagcgcggcaacaagggtgcggcgctgacc
acctatctgagccttgcgggccgctattgcgtgctgatgcccaacaccagccatggcggc
ggcatttcgcgcaaaatttccaatgccgcggaccgcaagcggctcaagacgatcatcgcc
gacatggcgctgccctccaccatgggctgcatcgtccgcaccgcaggccttcagcgcacc
aagacggagatcaagcgcgacttcgactatctggcgcgcctgtgggacgaaattcgcgaa
aatacgctcaattccgccgcacccgcattgatccacaatgatagcgacctcatcaaacga
gcgatccgcgatatctacaacaaggatatcgaagaagtcatcgtcgagggcgagcatggc
tataaggccgccaaggatttcatgaagctgctgatgcccagccatgcccggcgggtgaag
caatatgccgatgccgtgtcgctgttccagcgggccagtgtcgaagaccagctcgcagcc
atgtataatccggtcgtgcagctcaagtccggcggctatctcgtcatcaatccgacggag
gcgctggtgtcgatcgacatcaactcgggccgttcgacccgcgagcatggcatcgagcag
accgccgtcgccaccaatctggaagcggcgcgggaaatcgcgcggcagcttcgcctgcgc
gacatggctggcctggtcgttatcgacttcatcgacatggagatgaactccaacattcgc
aaggtcgagaaggcgatgaaggaggcgttgaaggacgatcgcgcccgcatccaggtcggc
cgcatctcgggctttggcttgatggagatgagccgccagcggctacgcaccggcgtactg
gaagcatcgacccgccaatgcccgcattgcgaaggcaccgggctggtgcggaccgcttcg
tcggcggggctttccgcgctgcgtatgctggaagaggaagcggcgcgcggtcgcggcagc
atcgtcacgctgcgcgcaagccaggaagcggccttctacgtcctcaacaacaagcggcgt
gaactcgatgagatcgagcagcgctatggcgtcactatcgtcatcctgcccgatggcgaa
gtggaaggcgcgcgcatgtcggtggaggccagcggcccccgtcccgagcgcgtcgtgagc
tatgcgccgctcgccgaagaggaagatgacctcgacgtgattgaggaggaggaagaagaa
tccgaggaggaagaaacttcctccgagcgtgaggaacgcggcgaggaacgcgaaggcggc
cgtcgccgtcgtcgccgtcgtcgtcgccggggtggtccgcgtgacgaacaggatagccag
gccgctgccgatgggagcgaagaagcggaaggcgaagcggacgtggatgccgacgctggc
gaagacattgccgaagcagccgcaggcgaaggagccgacgaaggcgaagcgggccgcaag
cgtggccgccgtggtcgccggggcggtcgtcgtcggcgcgaggctggcgaagcggaggct
ggtgacgctgcgagcgaaaccgccgaagcggtggaagcagtcgaaaatgcccccgaagcg
gaacctgtggtcgcgccggatgcggcagccgctgtagagcccgtcgcggaggaagcgccc
aagacacgccgccgtccccgcgctcgcaaggtgaaggaagccgtagctgaaccggctgcg
acggaaaatgccgagccggtcgcgcaagcgcctgtcgaggagcctgtcaccgaagcggct
ccggccaagcccaagcgcacccgccgcaagaagcctgccgcgagcgatgccgaaacggcc
gataccgtgatcgtggcggaagcccctgcggtggagacagaagccgaagcaaagcccaag
cccaagcgcacccgccgcaagaaggcggatgccgccgtcgaggaaatcgctgccgaggtt
gcgccggaagcggctgcagaagtgatcgaaccgattgccgcgcaagcagcgcccgaaacg
gtggcggcttcggtcgagggcgcggaaaccgccgaaggggaagaggaaaacggctcgccc
cggcgcggttggtggcagcgcaccttcggccaataa
DBGET
integrated database retrieval system
