Sphingobium baderi: ATN00_01335
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Entry
ATN00_01335 CDS
T04194
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sbd
Sphingobium baderi
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbd03016
]
ATN00_01335
Enzymes [BR:
sbd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ATN00_01335
Transfer RNA biogenesis [BR:
sbd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ATN00_01335
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ALR19152
UniProt:
A0A0S3EUP0
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All DBs
Position
257896..259071
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AA seq
391 aa
AA seq
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MQIHPLITDSKTLAEFCARIAKSPYIAIDTEFMRENSYWPDLCLVQVADPHEAAAIDPKA
PGLDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIG
YGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPMMLEELRKTGRGG
WLDQEMERVCDPENYRNDPQEAWQRVRIASRKADVLGRLKALAAWRELEAQDKNLPRGRI
VKDETLADIASHPPRSQEDLGKVRGLSATWKSNDIGGRLMAALAASQPLPRDEMPDREPR
RPGLGKDGALVADLLKLLLKIRSRDINVASRLIARSDDIDALAAGVRDGLSILEGWRYDQ
FGRDAVDLVEGRLAFAVNNGRLKMTRTEEER
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccatccgctgattaccgacagcaagacactcgccgaattttgcgcccgcatc
gccaaatccccctatatcgcgatagataccgagttcatgcgggaaaacagctattggccg
gacctgtgcctggtgcaggtggccgacccgcatgaagccgccgccatcgacccgaaggcg
ccgggactggacctgtcccccttgctcgacctgatggtcgacaatgaggatgtgctgaag
gtcttccacgcgggcgggcaggatctggagatcatctacaacctgaccggcaagacgccc
catccgctgttcgacacgcagatcgcggcgatggcgctcggccttggcgaacagatcggt
tatggcaatctggtcgacgcatggctgggggtgcaactcgacaagggcgcgcgcttcacc
gactgggcgcggcggccgctggacaagcggcagatcgactatgccattggcgacgtcacc
tatctgatccagattttccccatgatgctggaggaactacgcaagaccgggcgcggcggc
tggctggatcaggagatggagcgggtgtgcgaccctgaaaactaccgcaacgatccgcag
gaagcgtggcagcgcgtccgcatcgccagccgcaaggccgatgttctggggcggctgaag
gcgctggcggcatggcgcgaactggaggcgcaggacaagaacctgccgcgcggccgcatc
gtcaaggacgagacgctggccgacatcgccagccatccgccccgcagccaggaggacctg
ggcaaggtgcgcgggctgtccgcgacgtggaagagcaatgatattggcggacgactgatg
gcggcgctggcggcttcgcaacctctgccgcgtgacgagatgcccgatcgcgagccgcgc
cgtccgggactgggcaaggacggggcgctggttgccgatctgctcaagctgctgctcaag
atccggtcgcgggatatcaatgtcgcctcccgcctgatcgcacgatccgacgatatcgac
gcgctggcggcgggcgtgcgcgacgggctgtcgatcctggaaggctggcgttacgatcag
ttcgggcgggacgcggtcgatctggtcgaagggcggctggccttcgcggtgaataatggc
cggctcaagatgacgcgcacggaagaggagagatag
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