Sphingobium baderi: ATN00_03380
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Entry
ATN00_03380 CDS
T04194
Name
(GenBank) AMP-dependent synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sbd
Sphingobium baderi
Pathway
sbd00061
Fatty acid biosynthesis
sbd00071
Fatty acid degradation
sbd01100
Metabolic pathways
sbd01212
Fatty acid metabolism
sbd02024
Quorum sensing
sbd04146
Peroxisome
Module
sbd_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
ATN00_03380
00071 Fatty acid degradation
ATN00_03380
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
ATN00_03380
09145 Cellular community - prokaryotes
02024 Quorum sensing
ATN00_03380
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sbd01004
]
ATN00_03380
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbd04147
]
ATN00_03380
Enzymes [BR:
sbd01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
ATN00_03380
Lipid biosynthesis proteins [BR:
sbd01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
ATN00_03380
Exosome [BR:
sbd04147
]
Exosomal proteins
Exosomal proteins of breast milk
ATN00_03380
Exosomal proteins of breast cancer cells
ATN00_03380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Prenylcys_lyase
Motif
Other DBs
NCBI-ProteinID:
ALR19496
UniProt:
A0A0S3EVQ1
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All DBs
Position
666900..668642
Genome browser
AA seq
580 aa
AA seq
DB search
MFFARAKEMGDAPFLWRKKDGAWRSMSWTDVAYDVAALASALRAQGLKPGDPVMLVSENR
PEFCIADLAIMAAGGVTVPTYTTNTTRDHQHILTDSGAQAVIVSTAKLAATLMPAVLRSQ
ARFVIGMEPVRGAQGQIACHLWSDLIAAHPTDIEACALEQTAGREDLACIIYTSGTGGAP
RGVMQHHGSILCNIEGAAKLVAEDFGWDDEVFLSFLPLSHAYEHSGGQFLPIMLAAQIYY
SEGLEKLASNIEETRPTIMVVVPRLFEVLRARIIKSIEKQGKLPHFLLQQALRIAAKEQR
GAKSVLDLPMKALLSRTLRPKVAKRFGGRMKALVSGGAPLNPDVGLFFEAMGLTLLQGYG
QTEAGPVISCNRPAAGIAMDTVGPPLDGVEVRIAEDGEILARGELVMHGYWRNPAETEKV
LKDGWLHTGDIGEIDARGRIRITDRKKDLIVNDKGDNVAPQKVEGMLTLQPEIGQAMVSG
DRRPHLVGLIVPDAEWTREWAAAQGKGVEGVESDPAYLTALRAAVDRVNQDLSVIERVRR
FILADEPFSIENEEMTPSMKIRRHVIRKRYQERLDALYKA
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttctttgcgcgcgcgaaggagatgggcgacgcccccttcctgtggcgcaagaaggac
ggcgcatggcgttcgatgagttggacggacgtcgcctatgacgtggcggcgctggcgagc
gcgctccgggcgcaggggctgaaacccggagacccggtgatgctggtgagcgagaaccgg
ccggaattctgcatcgccgatctggccatcatggcggcgggcggcgtcaccgtgccgacc
tacaccaccaacaccacgcgcgatcatcagcatatcctgacggacagcggggcgcaggcg
gtgatcgtgtccaccgcgaaactcgccgccacgctgatgcccgccgtgctgcggtcgcag
gcgcgcttcgtgatcggcatggaaccggtgcgcggggcgcagggccagatcgcatgccat
ttgtggagcgacctgatcgccgcgcatcccaccgatatcgaggcctgcgcgctggaacag
acggcgggacgcgaagatctggcctgcatcatctacaccagcggcacgggcggcgcgccg
cgcggggtgatgcagcatcacggctcgatcctctgcaatatcgagggcgccgcaaagctg
gtcgcggaggatttcggatgggatgacgaggttttcctgtccttcctccccctctcccac
gcctatgagcatagcggcgggcagttcctgccgatcatgctggcggcgcaaatctattat
tccgaagggctggaaaaactcgcctccaatatcgaggagacgcggcccaccatcatggtg
gttgtcccccgcctgttcgaagtgctgcgcgcgcggatcatcaagtcgatcgagaaacag
gggaagctcccccatttcctgctgcaacaggcgctgcggatcgccgcgaaggagcagcgc
ggcgcaaagtcggtgttggacctgccgatgaaggcgctgctgtcgcggactttgaggccc
aaggtggcgaagcgcttcggcgggcggatgaaggcgctggtgtcgggcggcgcgccgctc
aatcccgatgtcgggctgttcttcgaggcgatggggctgacgctgctgcaaggctatggc
cagacggaggcgggaccggtcatcagttgcaaccggcccgccgccggcatcgccatggac
acggtcggcccgccgctggatggcgtggaagtcagaatcgccgaggatggcgagatattg
gcgcgcggcgaactggtgatgcacggttactggcgcaatccggcggaaacggaaaaggtg
ctgaaggacggctggctgcacaccggcgacattggcgagatcgatgcgcgcgggcgcatc
cgcatcaccgaccgcaagaaggacctgatcgtcaatgacaagggcgacaatgtcgcgccc
cagaaggtcgaggggatgctgaccctgcaacccgaaatcgggcaggcgatggtgtcgggc
gaccggcggccgcatctggtcggcctgatcgtgccggacgccgaatggacccgcgaatgg
gcagcggcgcagggcaagggcgttgaaggggtcgagagcgatccggcctatctgacagcg
ctgcgggcggcggtggaccgggtgaaccaggacctgtccgtgatcgagcgggtgcggcgc
ttcatcctggcggacgagcccttctccatcgagaatgaagaaatgaccccgtcgatgaaa
atccgccgccacgtcatccgcaaacgctatcaggagcggctggacgcgctttataaggcg
tag
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