Sphingobium baderi: ATN00_06035
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Entry
ATN00_06035 CDS
T04194
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sbd
Sphingobium baderi
Pathway
sbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATN00_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbd03019
]
ATN00_06035
03400 DNA repair and recombination proteins [BR:
sbd03400
]
ATN00_06035
Enzymes [BR:
sbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATN00_06035
Messenger RNA biogenesis [BR:
sbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATN00_06035
DNA repair and recombination proteins [BR:
sbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ATN00_06035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALR19933
UniProt:
A0A0S3EWY3
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All DBs
Position
1222023..1223795
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AA seq
590 aa
AA seq
DB search
MRPDIPTLLHDIFGFPGFRGVQEQVVGRVMDGQATLAIMPTGAGKSLCYQLPSVALEGCC
VVISPLIALMHDQLRAAQAVGIRAASLTSVDADWRETQERLRGGDLDLLYVAPERASGEG
FRSLLRSAKIALFAIDEAHCVSEWGHDFRPDYRLLRPLLDEFAAVPRLALTATADAHTRE
DILVQLGIPREGMVIAGFDRPNIRYAVHARDGLPRQLADLAAANPGPGIVYAQTRAATEK
LADGLARTGRAVRVYHAGLDPQVRAANQAAFIASEDMVMVATIAFGMGIDKPDVRFVAHA
GLPKSIEGYYQESGRAGRDGEPAQAHLYWGAEDFARARQRIAELDPTRQQGERARIAALG
ALVETGTCRRAILLRHFGESPPATCGNCDNCMSPPASIDATQTAQKFLSAVYRTGQSFGA
GHIESVLTGAATDKIRDRGHDRISVYGIVEGDETALLRPVSRALLVRDALETTEHGGLML
GPNARPILRGEEEVRIVLPPRRERRKRSARNGSEANPVGDPLFDALRACRRELAQEAGVP
PYVIFHDSTLREMAEQRPTTLAELGHVSGVGQRKLDAYGDAFLAAIRPFA
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccgacatccccacgctgctgcacgacatattcggctttcccggctttcgcggg
gtgcaggaacaggtggtgggccgtgtcatggacgggcaggccacgctcgccatcatgccg
accggcgcgggcaagtcgctctgctatcaattgccctccgtcgcgctggagggctgctgc
gtcgtcatatccccgctgatcgccctcatgcacgaccagcttcgcgccgcgcaggcggtc
ggcatccgcgccgccagcctgaccagcgtcgatgcggactggcgcgaaacgcaggagcgg
cttcggggcggcgacctcgacctgctctatgtcgcccccgaacgcgccagcggcgaaggc
ttccgcagcctgctccgttcggcgaagatcgccctcttcgccatagacgaagcgcattgc
gtctcagaatggggccatgatttccgccccgactatcgcctgctccgcccgctgctggac
gaattcgccgctgtcccccgccttgcgctcaccgccaccgccgacgcgcacacgcgtgag
gacatcctcgtccaactgggcatcccgcgcgaaggcatggtcatcgcgggcttcgaccgg
cccaatatccgttatgccgtccacgcccgcgatggcctgccgcgccagttggccgacctc
gccgccgccaatcccggccccggcatcgtctatgcccagacccgcgccgcgaccgagaag
ctggccgacggcctcgccaggaccggccgcgccgtccgcgtctatcacgcgggcctcgac
ccgcaggtccgcgccgccaaccaggccgccttcatcgccagcgaggacatggtgatggtc
gccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcccatgca
ggcctgcccaaatcgatcgagggctattatcaggaatcgggccgcgcaggccgcgacggc
gaaccggcgcaggcgcatctctattggggcgcggaggatttcgcccgcgcccgccagcgc
atcgccgaactcgatcccacccgccagcagggcgagcgcgcccgcatcgcggcgctgggc
gcactggtcgaaaccggcacctgccgccgcgccatcctgctccgccatttcggcgaaagc
ccgcccgcgacctgcggcaattgcgacaattgcatgagtccgcccgccagcatcgacgcg
acccagaccgcgcagaaattcctctccgccgtctaccgcaccggccagagcttcggcgcg
ggccatatcgaatcggtcctgacgggcgcggcgacggacaaaatccgcgatcgcggccat
gacaggatttccgtctatggcatcgtcgagggggatgagacggcgctcctccgtcccgtc
tcccgcgccttgctggtccgcgacgcgctcgaaaccaccgagcatggcggcctgatgctc
ggccccaacgcccgcccgatcctgcgcggcgaggaagaagtccgcatcgtcctccccccg
cgccgcgaacgccgcaagcgcagcgcccgcaacggcagcgaagccaaccccgtgggcgat
ccgctgttcgacgccctgcgcgcctgccgccgcgaactggcgcaggaagcgggcgtgccg
ccctatgtcatcttccacgattccaccctgcgcgaaatggcggagcagcgccccacgacc
ctggccgaactcggccacgtcagcggcgtcggccagcgcaagctcgacgcctatggcgac
gccttcctggccgccatccgacccttcgcctga
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