Sphingobium wenxiniae: ATN00_09665
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Entry
ATN00_09665 CDS
T04194
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbd
Sphingobium wenxiniae
Pathway
sbd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATN00_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbd03019
]
ATN00_09665
03009 Ribosome biogenesis [BR:
sbd03009
]
ATN00_09665
Enzymes [BR:
sbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATN00_09665
Messenger RNA biogenesis [BR:
sbd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATN00_09665
Ribosome biogenesis [BR:
sbd03009
]
Prokaryotic type
rRNA helicases
ATN00_09665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ALR20533
UniProt:
A0A0S3EYT6
LinkDB
All DBs
Position
complement(1941382..1943118)
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AA seq
578 aa
AA seq
DB search
MTFEHLPTLLADALGKKGYENLTPVQAQVTQTEAEGRDLVVSAQTGSGKTVAFGLAMAGE
LLDEAGKLPVPGRPLGLVIAPTRELALQVSRELEWLYGAARARIATCVGGMDASKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSDLRTAVLDEADEMLDMGFREDLEEILDATPEGRR
TLLFSATMPKPIVALARRYQKDALRISTVSDERGHGDISYQALTVAPADIENAVVNLLRF
HEAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDKRARVCVAT
DVAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSREAIQEQDNARLRAALMERAELDEADWALGAELLEEKSAKEIAAMLV
RSARAALPQPEELLDASEAPLRRDGPRPGFEDTVWFRMDIGRRQNADPRWILPLVCRRGH
VSRGEIGAIRIAANETLFEIPSAIASRFMAAVKRTGQANDEGAEVAIEQIEGTPREQARE
HRKGGPRPGNGDRPRSGAPHSPRPFKGPKRGGPRKPRG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaacatctccctaccctgctcgccgacgcgctcggcaagaagggctatgaa
aacctgactccggtgcaagctcaggtgacgcagaccgaggcggaaggccgcgacctggtg
gtttccgcgcagaccggatcgggcaagaccgtggccttcggccttgccatggcgggggaa
ttgctggacgaggcggggaagctgcctgttccgggcagaccgctgggactggtgatcgca
ccgacgcgcgaactggcgctgcaggtgagccgggagctggagtggctctacggcgcagcg
cgggcgcggatcgcgacctgtgtgggcggcatggacgcttccaaggagcggcgggcgctg
tcccatggcgcgcatatcgtcgtgggcacgccaggacgtctgcgcgaccatctggagcgc
ggggcgctggacttgtcagatctgcggacagccgtgctcgatgaagcggacgagatgcta
gacatggggttccgcgaggatctggaagagatactggacgcgacgccggaaggtcggcgg
acgctgctgttctccgccacgatgcccaagcccatcgtagcgctggcaaggcgttatcag
aaggatgcgctacggatctccacggtcagcgatgagcgcggccatggcgacatcagttat
caggcgctgacggtcgcacccgccgacattgagaatgcagtggtcaacctgctgcgcttt
cacgaggcggagacggcgatcctcttttgcgcgacacgggacaatgtacggcatctgcat
gcgagtttgacggagcggggatttgccgccgtggccctgtcgggggaacatagccagaat
gaacgcaatcatgcattgcaggcgctacgtgacaagcgagcgcgggtgtgtgtggcgacg
gacgtggcggcgcgtggcatcgatctgccgaacctctccctcgtcgtccatgtcgagctg
ccgcgcgatgcggaaacaatgcagcaccgttcgggccgcaccgggcgcgcggggaagaag
ggaacggcggtgctgatcgtgccctatccgcgccgccgccgggttgaatccatgctgcgg
ggcgcaaagatccccgtcgagtggggcacaccgcccagccgcgaggccattcaggaacag
gataatgcgcggctgcgcgctgccctgatggaaagggccgaactggacgaggctgactgg
gcgctgggcgcggaactgcttgaggaaaaaagcgcgaaggaaatcgcggccatgttggtg
cgtagcgcccgcgccgctctgccccagccggaggaactgctcgacgccagcgaagcgccg
cttcggcgcgatgggccgcgtcccggtttcgaggatacggtctggttccgcatggacatc
ggacgacggcagaatgccgacccccgctggatattgccgttggtctgtcgccgtggccat
gtcagccgtggcgagatcggcgcgatccgcatcgccgccaacgagacgttgttcgaaatt
ccctctgccatcgcatcgcgcttcatggcggcggtaaaacggacggggcaggcgaatgac
gagggcgcggaagtcgcaatcgagcaaattgaaggcacgccgcgcgagcaagcccgcgaa
catcgtaaaggcggcccacggccaggcaatggcgatcgccctcggagcggggcaccacac
agcccgcggccgttcaagggaccaaagcgcggcggcccgcgcaaaccgcgcggataa
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