Sphingobium baderi: ATN00_13105
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Entry
ATN00_13105 CDS
T04194
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sbd
Sphingobium baderi
Brite
KEGG Orthology (KO) [BR:
sbd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbd03032
]
ATN00_13105
03400 DNA repair and recombination proteins [BR:
sbd03400
]
ATN00_13105
Enzymes [BR:
sbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ATN00_13105
DNA replication proteins [BR:
sbd03032
]
Prokaryotic type
DNA Topoisomerases
ATN00_13105
DNA repair and recombination proteins [BR:
sbd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ATN00_13105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Poly_export
DUF7343
Motif
Other DBs
NCBI-ProteinID:
ALR21092
UniProt:
A0A0S3F0C3
LinkDB
All DBs
Position
2657070..2659637
Genome browser
AA seq
855 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPEAGFAMSWENYGDKGK
QLKAITDQAKKADRLILATDPDREGEAISWHVQEVLRAKKALPAKVDRVTFNAITKQAVT
DAMAHPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIETFTAQEYWSVAAEMEQGGQGFTARLVRWRGEKIERLTIGKEGDAMAAKADVEAGRF
TVEKVETKPLTRNPPAPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAQRYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFGRDKVGSGDHAR
LYDLIFKRALASQMASARMERTTVDMVDGTGQHALRATGQVVIFPGFLALYEEGRDDSED
EDGKLLPRMATGDAPAKKKVMAEQHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVL
KDRDYVRVEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQAVL
EAFWRDFKPKTAEVMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPMCDDGQLSLRGG
RFGAFIACSNYPECKYTRKFGQPGGANGGEDTGPEVLGQHPETGQDIVRKSGRFGPYIEM
GEGKEAKRGSIPKDLPDGELTLEWAVKLLSLPREIGLHPETGKPIVANIGRFGPYLLHDG
KYGRLSSTAEIFEVGMNSAVAKLADAANRGGRSAGGREPLKVLGKHPRTEAEIKLMAGRY
GPYVTDGTTNATLPKTIEQDALTLEEAAQLIDTRAAAAPAKKGKKAAPKKAAAKKAPAKK
APAKKAATKKATAAE
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgcagctagttatcgtcgaatcgcccgccaaggcgaagaccatcgagaaatatctgggc
ggcgatttccatgtgctcgccagctatggccatattcgcgacctgcccgcgaaggacggg
tcggtggacccggaagccggctttgcgatgagctgggaaaattatggcgataagggcaag
cagctcaaggccatcacggatcaagccaagaaagccgaccgcctgatcctggccaccgac
cccgatcgcgagggtgaggcgataagctggcatgtgcaggaagtgctgcgcgccaagaag
gcgcttcccgcgaaggtcgaccgcgtcaccttcaacgccatcaccaagcaggcggtgacg
gatgccatggcgcatccccgcgccttggacgaggatctgatcgacgcctaccgagcgcgg
cgggcgctggactatctggtggggttcacgctgtcgccggtgctctggcgcaagctgccc
ggcgcgaaatcggcggggcgggtgcagtcggtggcgctgcggttggtggtggagcgtgag
cgcgaaatcgaaaccttcacggctcaagaatattggtccgtcgcggcggagatggagcag
ggcgggcagggtttcacggcgcgactggtgcgctggcgcggcgaaaagatcgagcgcctg
accatcggcaaggaaggcgacgccatggccgcgaaggcggatgtggaggcgggacgcttc
accgttgagaaggtcgagacgaagccgctcacccgcaatcctccggcgcccttcaccaca
tcgacgttgcagcaggaagcggcgcgcaagctgggcttttccgccagccacacgatgcgg
atcgcgcagcagctttatgaggacggcgcgatcacctatatgcggaccgacggcgtgcag
atggacggcagcgccatttccgcagcgcgcaaggcgatagcgcaacgctatgacggcggt
tatctgccggagaagccgcgccagtatcagactaaggccaagaacgcgcaggaagcgcat
gaagccatccgcccgaccgaattcggccgcgacaaggtgggttcgggcgatcatgcgcgg
ctctacgacctgatcttcaagcgggccttggcgagtcagatggcgtcggcgcggatggaa
cgcacgaccgtcgatatggtggacggcacggggcaacatgcgttgcgcgccacggggcag
gtggtgatcttccccggcttcctcgcgctctatgaggaaggccgcgacgacagcgaagat
gaggacggcaagctgctgccgcgcatggcgacgggcgatgccccggcgaagaaaaaggtg
atggcggaacagcatttcacccagccgccgccacgctattccgaagcgagtctggtcaag
aagctggaggagttggggattgggcgtccgtccacctatgcctcgacgcttcaggtgctc
aaggaccgcgattatgtgcgtgtcgagaagaaccgcttctttgcggaggaaagcgggcgg
ctggtgacggcgttcctggagcgcttcttcgaacgctatgtgtcctatgatttcacggcg
ggccttgaggacgaactggacgagatttccggtgggcgcgcccagtggcaggcggtgctg
gaagccttctggcgcgacttcaagcccaagaccgctgaggtcatggagcagaagccgtcc
gacatcacggcggagctggacaagttcctcgaacccatgctgttccccccgaaggcggac
ggcagcaatccgcgtgcctgcccgatgtgcgatgacgggcaattgtcgctgcgtggtggg
cgattcggggcgttcatcgcctgctccaactatcccgaatgcaaatatacgcggaaattc
gggcaacccggcggcgccaatggcggcgaggacacggggccggaagtgctgggtcagcat
cccgaaacagggcaggatatcgtccgcaaatccggccgctttgggccttatattgaaatg
ggcgaggggaaggaggccaaacgcggctccattcccaaggatctgccggatggcgaactg
acgctggagtgggccgtgaaactgctcagcctgccgcgcgagatcggtctgcatcctgaa
accggcaaacccattgtcgccaatatcgggcgctttgggccttatctgctgcatgacggc
aaatatggccgcctgtcctccaccgccgagattttcgaggtcggcatgaacagtgcggta
gcgaagctggccgatgccgccaatcgcggcgggcgttcggcgggcggacgggaaccgctc
aaggtgctgggcaagcatccccgcaccgaggcggagatcaagctgatggcggggcgctat
ggcccctatgtcaccgacggcaccaccaacgcgaccctgcccaagaccatcgagcaggat
gcgctgacgctggaagaagcggcgcagttgatcgacacgcgcgcggcggcggctccggcg
aaaaaggggaagaaggccgctcccaaaaaggctgcggccaagaaggcacccgccaagaag
gcacctgcaaagaaagctgcgacgaaaaaggcgactgcagcggagtga
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