KEGG   Sphingobium baderi: ATN00_14215
Entry
ATN00_14215       CDS       T04194                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
sbd  Sphingobium baderi
Pathway
sbd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ATN00_14215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbd03019]
    ATN00_14215
Enzymes [BR:sbd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ATN00_14215
Messenger RNA biogenesis [BR:sbd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ATN00_14215
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Utp25_C ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: ALR22651
UniProt: A0A0S3F4H6
LinkDB
Position
complement(2917696..2919075)
AA seq 459 aa
MQFTELGLAEPILKALAAKNYATPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL
DHFARNPKQTPLNGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIKA
LSRGVDIVVATPGRLLDLLDQRAFTIKDTEIFVLDEADQMMDMGFIHPLRRIAKLLPKER
QNLFFSATMPKEIEALAAQFLNDPVKVSVAPQSTTAERVLQRASFVNQAEKQALLTLTVK
NEPIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAIE
RTAKVKLEIVPLPENFMEAVRNLPKPAPPRKGKPQTSEQQAKRADGQRRYQDQQKQQRGT
PDRAHRPDGDAAPAKKKPFRRRRSGVGAHKGAVQRTGQR
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgcaattcaccgaacttggccttgccgaaccgattctaaaggcgctggccgccaaaaat
tacgcgacccccacgccgatccagcaaaaggcgatcccggtcctgctggaaggccgcgac
ctgtgcggcattgcccaaaccggcaccggcaagacggcggcctttgcgctgcccagcctg
gaccatttcgcccgcaatccgaagcagacgccgctcaatggctgcaggatgctggtgctt
tcgcccacccgcgaacttgccgcgcagatcgcgcagagtttccgcgactatggccgtttt
ctgaaactttcggtcgaagtcgtcttcggcggcgtgcccatcaatcggcaaatcaaggcg
ctgagccgtggcgtggacatcgtcgttgcgacgccgggccgcctgctcgacctgctcgac
cagcgggccttcaccatcaaagatacagaaatcttcgtcctcgatgaagccgaccagatg
atggacatgggtttcatccacccgctgcggcgtatcgccaagctgctgccgaaggaacgg
cagaacctgttcttctccgcgaccatgcccaaggagatcgaggcgctcgccgcgcagttc
ctgaacgatccggtgaaggtcagcgtcgcgccacaatccacgacggccgaacgcgtcctc
cagcgggcaagcttcgtcaatcaggcggaaaaacaggcattattgaccctgacggtcaag
aacgagccgatcgaccgcgccctcatcttcacccgcaccaagcatggcgcggatcgcgtc
gtgcgtttcctggaaggggcgggcatccaggcggtcgccatccacggcaataagagccag
gctcagcgcacgaccgcgcttcaggctttccgccacggtcatgtgaaactgcttgtcgcg
accgacatcgccgcgcgtggcatcgatgtgtcgggcgtgagccatgtcatcaatttcgag
ctgcccaacgtgccggagcaatatgtccaccgcatcggccggacggcccgcgcgggcgcg
gaaggcatcgcgatcagcttcgtggcggatgatgagcggccatatctcaaggccatcgag
cggaccgccaaagtcaagctggagatcgtgccgttgcctgaaaatttcatggaagcggtt
cgcaacctccccaagcccgcgcccccgcgcaagggcaagccgcagacttccgaacagcag
gcgaagcgcgccgatggccagcgccgctatcaggatcagcagaagcaacagcgcggcacg
cccgaccgcgcccatcgtcccgatggcgatgcggcgcccgcgaagaaaaagcctttccgt
cgccgccgcagcggcgtgggcgcgcataagggcgcggtgcagcggacggggcagcgttaa

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