Fluviispira sanaruensis: JCM31447_23640
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Entry
JCM31447_23640 CDS
T05949
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbf
Fluviispira sanaruensis
Pathway
sbf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM31447_23640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbf03021
]
JCM31447_23640 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbf03400
]
JCM31447_23640 (rpoC)
Enzymes [BR:
sbf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM31447_23640 (rpoC)
Transcription machinery [BR:
sbf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM31447_23640 (rpoC)
DNA repair and recombination proteins [BR:
sbf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM31447_23640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Rab3-GAP_cat_C
Motif
Other DBs
NCBI-ProteinID:
BBH53911
UniProt:
A0A4P2VLX5
LinkDB
All DBs
Position
complement(2733762..2737955)
Genome browser
AA seq
1397 aa
AA seq
DB search
MSMNEGTKDVYSFFEKPVDPLNFSAVKIGLASPERIRSWSYGEVKKPETINYRTFKPERD
GLFCGKIFGPVRDFECICGKYKRKKHRGTVCEKCGVEVIESKVRRERLGHINLASPVAHI
WFLKSLPSRIGCVVDISLKDLEKVLYCESYIVLDPGTSDLKKHELISEDRFAAKVRELGN
NAFRVGIGADALLEMLQSVDVFELAEHLKESLLNTTSDAQSKKLIKRLKVVGAFTMSDNR
PEWMMLSVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLLRLIELNAPEIIVR
NEKRMLQEAIDALFDNGRRGKVFTGPNKRPLRSLSDMLKGKGGRFRQNLLGKRVDYSGRS
VIVAGPELRLHQCGLPKLMALEMFKPFLFNKLEERGYVSTIKSAKKMVEKERPEVWDLLE
ECTKEHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCQAFNADFDGDTMCVHVPLS
LEAQIEARVLMMSTNNILSPQHGTPIIEPRKDIVLGLYYLTRENITLRGDSMKFSSLEEV
RVAYDHGFVELHTRIFVREHQGDKELVQTTVGRCLLREVIPDKVPFFKKYNKALDQKALA
VLVNDTYRLCGAKETVLLADALRELGYRYATESGISIAIKDMMIPKEKTKLLDEAYSEVK
EVREQYAEGLITEGERHNKVIDIWSRVQDEITVKMLKQLETQKAVNQKGEEVRIQSFNSL
YMMADSGARGSKQQMRQLAGMKGLVAKATGEIIETPVTSNLREGFTILQYFINTHGARKG
LADTALKTASSGYLTRQLVDVAQDTIISETDCGTLDGVEITSVVEGGEVIQRVGNRTLGR
TSLYDIKNRATGEVIVKANEEINEEAVIRLDQAKIDRVYVRSVLTCRTRRGVCAKCYGRD
LATGNLVNVGEAVGVIAAQSIGEPGTQLTMRTFHSGGTATTQSQASSYEAKAEGTVQLSN
VSLVKGRSEWDTAMGRNGEVIVYDLDGIERDRHSIPYGSKVFVKDGASVKVGTMLIEWDP
HSVVIVSEVPGKVKFQDLFEGVSVEERTDEVTGLTRRVVIENKDTKIKPAIVVTDSSGTA
IRITETRDARYPLPSGATIMFADGDMVYPGDVLAKIPREQAKTKDITGGLPRVAELFLAQ
KRRTFAIISEIDGFVSFGADIKGKRRVVVNPEMGGGDSREYLIPKGRHVVVTEGDFIRAG
EPLVDGPLNPHDILKVLGEKALASYLVSEIQAVYKLQGVNIDDKHIEIIVKQMLRRVRIK
DPGDTEFLPAAQIEKWTFEEQNELAMQRGARPATAEPLLLGIARAASSTESFISAASFQE
TTRVLTEAALAGRKDLLRGLKENVIMGRLIPAGTGVNYYNNLDMFVEGQSLDAEAIIEAS
IPQVVARLGTGSHHQMR
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgaatgaaggtaccaaagatgtttacagtttcttcgaaaaacctgtagatcct
ttgaattttagtgcagtaaaaattggtttagcttctcctgagcgcatcagaagttggtct
tatggtgaagttaaaaaacctgaaacaatcaactacagaacattcaagcctgaacgtgac
ggacttttctgcggaaaaatcttcggacccgttcgtgacttcgaatgtatttgtggaaaa
tacaaacgtaaaaaacaccgcggaaccgtctgtgaaaagtgcggcgtggaagttattgaa
agcaaagtgcgtcgcgaaagactcggtcacatcaacttggccagtcctgttgcgcacatt
tggttcttaaaaagtttaccttcccgtattggctgcgttgttgacatctcgcttaaagac
ctcgaaaaagttctttattgcgaatcttacatcgtgctcgatccaggaacttccgatctt
aaaaaacatgaactcatttcagaagatcgttttgctgcaaaagtacgtgaactcggaaac
aatgctttccgtgttggtattggtgccgatgctcttctcgaaatgcttcaatccgtagac
gtctttgagcttgctgagcatctcaaagagtctctattgaacacaacctccgatgcccaa
agcaaaaagcttatcaaaaggctgaaggttgtgggtgcattcaccatgagtgacaaccgt
cctgaatggatgatgttgtccgttatccctgtgttgcctccggacctgcgtccgcttgtg
ccactggatggtggtcgctttgcgacttctgacctcaacgacttataccgtcgtgtgatc
aaccgtaacaatcgcttgctgcgtttgatcgagctcaatgcgcccgaaattatcgtgcgc
aacgaaaaacgtatgcttcaagaagctatcgatgctctctttgacaatggtcgccgtgga
aaagtcttcacgggtcctaacaagcgtccactccgttccctctccgatatgttgaaaggg
aaaggcggtcgtttccgtcaaaacttgctcggtaagcgcgtggactactcaggtcgttct
gtaattgtggctggtccagaattgcgtttgcaccaatgcggtctgcctaagcttatggct
cttgaaatgttcaaacctttcctcttcaacaaacttgaagaaagaggctatgtttcaaca
atcaaaagtgcaaagaaaatggtggaaaaggaacgtccagaagtatgggatctccttgaa
gaatgtacaaaagaacaccctgttcttttgaaccgtgcgccaacattgcaccgccttggt
atccaggcgttcgaacctgtgctcatcgaaggtaaggctattcagcttcacccattggtg
tgtcaggcgtttaacgcggactttgacggtgatacgatgtgcgttcacgttccactcagt
ctcgaagctcaaatagaagcgcgtgtgcttatgatgtcgacaaataacattttgtctcct
cagcacggaacgcctattattgagccacgtaaagacatcgttcttggtctttactatttg
acacgtgaaaatatcactctgcgtggcgacagcatgaaattctccagtcttgaagaagtt
cgtgttgcctatgatcacggttttgttgagctccacacccgtatttttgtgcgcgagcac
caaggtgacaaagagcttgtgcaaaccacagtgggtcgttgcctcttaagagaagtgatt
ccagataaagtgcctttctttaaaaagtacaacaaagccctcgatcaaaaggctttggct
gtgcttgtaaacgatacctaccgtctttgcggagcaaaagagactgttctcttagccgat
gcattgcgtgaattaggttatcgttatgcaacagagtcgggtatttctatcgcaattaaa
gacatgatgattccaaaagagaaaacaaagctcttggatgaagcatacagtgaagttaaa
gaagttcgtgaacaatacgcagaaggtcttattacagaaggtgaacgtcacaataaagta
attgacatctggtcacgtgttcaggacgaaatcaccgtaaaaatgttgaagcagcttgaa
acacaaaaagcagtcaaccaaaaaggtgaagaagttagaattcaatcctttaactctctt
tacatgatggccgactctggagcccgtggttccaagcaacagatgcgtcagctcgctggg
atgaagggtctcgttgcgaaagcaacaggtgagattatcgaaactccagtgacttctaac
ttgcgcgaaggattcacaattcttcagtacttcatcaacactcacggtgcgcgtaaaggt
cttgccgatacagctcttaaaacagcttcttcaggttacctcacacgtcagttagtggat
gttgcacaagataccatcatttccgaaacagactgtggaactctcgacggagttgaaatc
acttctgtggttgaaggtggagaagtaatccaacgcgttggaaaccgtacgcttggaaga
acatctctttatgacatcaagaaccgtgcaaccggcgaagtgattgtcaaagcaaacgaa
gaaatcaatgaagaagcggttatccgcctcgatcaggctaaaattgaccgtgtctatgtg
cgttctgttttaacttgtcgtacccgccgtggcgtttgtgcaaaatgctacggtcgtgac
cttgcgacaggtaacctcgtgaacgtaggtgaagcggtcggtgtaattgcagctcagtct
attggtgagcctggaactcagttaacaatgcgtacgttccactcgggtggtactgcgaca
actcaatcccaagcttcttcttatgaagcgaaggcagagggtactgttcagctttccaat
gtcagcctcgtaaaagggcgttctgaatgggacactgcaatgggccgtaatggtgaagtt
attgtttatgaccttgatggtattgaacgtgaccgccattctattccatatggttctaaa
gtctttgtaaaagatggagcgagtgtaaaagtaggtaccatgcttattgaatgggatccg
cactctgttgtcatcgtttccgaagttcctggtaaagttaagttccaagaccttttcgaa
ggtgtatctgtcgaagaacgtactgacgaagtaactggtttgacccgtcgtgttgttatt
gaaaacaaagacacaaaaatcaaacctgcaatcgttgtaaccgactcttctggcactgct
attcgaattacagaaacccgtgatgcgcgttacccgcttccaagtggtgcgactatcatg
tttgcggatggggatatggtttatcctggtgatgttcttgctaaaattcctcgtgaacag
gcaaaaacaaaagatattaccggtggtcttccacgcgttgctgagcttttccttgctcaa
aaacgcagaacctttgcgattatctctgaaattgatggttttgtttcctttggtgcagat
atcaaaggtaaaagacgtgttgtcgtcaatccagaaatgggtggcggagacagccgtgag
tatctcattccaaagggacgccacgttgttgtaaccgaaggcgactttattcgtgcgggt
gagcctcttgttgatggtccattgaacccacatgacatcttaaaagttcttggtgaaaaa
gccttggcgagttaccttgtttctgaaatccaagcagtctataagctgcaaggtgtgaac
atcgacgataagcatattgaaattatcgttaagcaaatgctccgtcgtgttcgtattaag
gatccaggggatactgaatttttacctgcagcgcagatcgaaaaatggacttttgaagag
caaaacgaacttgctatgcaaagaggagcgcgtccagcaacagctgaacctcttctcctt
ggtattgcgagagcggcatcttcaacagaatcatttatctcagcagcatctttccaagag
acaacaagagtgcttacagaagcggctcttgctggacgcaaggatcttttgcgtggcctc
aaagaaaatgtcatcatgggtcgtttgattcctgctggaacaggtgtgaactactacaac
aatctcgatatgtttgttgaaggtcagagtctcgatgctgaagccattatcgaggcttcg
ataccacaagttgttgcacgccttgggacaggttcgcatcaccaaatgagataa
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integrated database retrieval system
