Fluviispira sanaruensis: JCM31447_29620
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Entry
JCM31447_29620 CDS
T05949
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sbf
Fluviispira sanaruensis
Pathway
sbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM31447_29620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbf03019
]
JCM31447_29620
Messenger RNA biogenesis [BR:
sbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JCM31447_29620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
5_nucleotid
Motif
Other DBs
NCBI-ProteinID:
BBH54491
UniProt:
A0A4P2VN68
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All DBs
Position
3390847..3392502
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AA seq
551 aa
AA seq
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MDDFSLKIIPLGGCGEIGMNMTLLCVMDKYFFVDGGALFPDASLLGVDLILPDTKFIDEN
QIWPEAWLITHGHEDHIGALPHLYKKYPAPIYGTEFTIELIKAKFDDANINDAILNKWDF
FQTVFFRNLKVTPFPVNHSIADASGLFFETQLGNILHMGDFRIDYYPPEKSMTHENIEKV
INGKKVHLMMSDSTNSFQTGTDFSETEVLPSIVDYLDKAEGIVVIATFASNIWRLQSIFE
SAKLTGRKIALFGRSLFRNTEIANRLGLLNFAETTIIEIQDVSRYPRNEVCIICTGSQGE
SFSGLHRIAWDNVADFKIEAQDTIIFSSRIIPGNERPIESIVTQLTRIGCKVVTAKDDKN
IHVSGHGYQDDLIKCIKTAKPKAFMPVHGTFRHLKQHRELAVECGIPEENCILVENGDVL
VAGPEFLGVVETVHSGRDYVCPGGIFSQSSPIYKDRVALIYGGVVAVSFVFPDVGYDLIG
TPAVTLKGVPLNAQELSKKMSMIFNYTIDLSLKKRNFSDEALQEDLRIAVRRFIEKKLNF
KANILILFQRV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttttctttaaaaatcattccactcggcggatgtggcgagattggaatgaac
atgacactattatgtgtcatggataaatatttttttgtcgatggtggagctttatttcca
gacgcttctctcttgggtgttgatctcatcttgcctgatacaaaatttattgatgaaaac
caaatttggcctgaagcttggctgatcacacatggtcatgaagatcatattggagccctt
ccacatctctataaaaaatatcctgcaccaatttatggaacagaatttactattgaactc
ataaaagcaaagtttgatgacgcaaatatcaatgatgccatattaaataaatgggatttt
tttcaaactgttttttttagaaatttaaaagtcacgccttttccagtaaatcacagtatt
gctgatgcctcaggtcttttttttgaaactcagcttggaaatatattgcacatgggagat
tttcgcatagattattatccgcctgaaaaaagtatgacccatgaaaatatcgaaaaagtc
ataaatggtaaaaaagttcatctaatgatgagtgacagtacaaattcatttcaaactgga
actgatttcagcgaaactgaagtactaccaagcatagtcgattatttagataaagctgaa
ggcattgtcgttattgcaacatttgcaagtaatatttggcgacttcaaagtatttttgaa
tccgctaaattaacaggacgcaaaattgctttatttggccgttcccttttccgcaataca
gaaattgcaaatagacttggtctattgaattttgccgaaacaactataatcgaaattcaa
gatgtgtcacgctatcctagaaatgaagtctgtattatttgtactggatcccaaggtgaa
tctttttcaggtttgcatcgaattgcttgggataatgtagcagattttaaaattgaggct
caagatactattatattttcctcaagaattattcctggcaatgaacgccctattgaaagc
atagtgactcagctgacacgtattggctgcaaagtcgtaactgcaaaagatgataaaaat
attcatgtaagtggtcatggctatcaagatgatctcataaagtgtatcaaaacagctaag
ccaaaggcatttatgccagttcatggcacatttaggcatttaaaacagcatagggaactt
gcagtggaatgtggaatacctgaagaaaattgcatactcgtagaaaatggagatgttctt
gtcgcaggtccagagttcttaggcgtcgtagaaactgttcattctggaagagattatgtc
tgccctgggggaattttttcacagtcaagtcctatatataaagatcgtgtcgcccttatt
tatggaggtgttgttgctgttagttttgtttttccagatgtaggttatgatttaattggc
actccagcggttacattaaaaggagttcctttaaatgctcaagagctttcaaaaaaaatg
tcaatgatttttaattacacaatcgatctcagccttaaaaagagaaatttcagcgatgaa
gctcttcaagaagatttaagaattgccgtgagaaggtttattgaaaaaaaacttaatttt
aaagctaatatattaattttatttcaaagagtttaa
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