Salmonella bongori NCTC 12419: SBG_3633
Help
Entry
SBG_3633 CDS
T01579
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta'-subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbg
Salmonella bongori NCTC 12419
Pathway
sbg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SBG_3633 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbg03021
]
SBG_3633 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbg03400
]
SBG_3633 (rpoC)
Enzymes [BR:
sbg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SBG_3633 (rpoC)
Transcription machinery [BR:
sbg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SBG_3633 (rpoC)
DNA repair and recombination proteins [BR:
sbg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SBG_3633 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
CCC32678
UniProt:
A0A0K0HGZ5
LinkDB
All DBs
Position
4017171..4021394
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKV
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacat
cgtggtgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcgtccccgaccgctcacatttggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgcgtgctgtac
ttcgaatcctatgtggttattgaaggcggtatgactaacctggaacgccaacagatcctg
acggaagagcagtatctggatgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagcattcgtccagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtgccgctggatggtggtcgtttc
gcaacgtctgatctgaacgatctgtatcgtcgcgtcatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgctctgctggataacggtcgtcgtggacgtgcgatcaccggttctaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactattctggccgttctgttatcaccgtaggtccatac
cttaggttgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggtcttgctaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctcgacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctactaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgtggtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgcaggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagatgaaaac
ggcgaattcgtagcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaggct
atctccaaaatgctgaacacttgctaccgtattctgggtctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatctctgaggcagaagccgaa
gttgctgagatccaggaacagttccagtccggtctggtaacagcgggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaactgaaaccgtgattaaccgtgacggccaggaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gttgacgtggcacaggatctggtcgttactgaagacgactgcggtacgcacgaaggtatc
ctgatgacgccggttatcgagggtggcgacgtgaaagagccgctgcgcgaccgcgtactg
ggtcgtgtgacggcggaagatgtgctgaagccgggtacggcggacattctggttccacgc
aacacgttgctgcacgagcagtggtgtgacctgctggaagcgaactccgttgacgccgtg
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtgtgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaataaaggtgaggctatcggggttatcgcggcg
cagtccatcggtgaacccggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacact
gaactgaaactgatcgacgaatttggccgtaccaaagaaagttataaagtgccttacggt
gccgttatggcaaaaggtgatggcgaacaggttgccggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccggttattactgaagtcagtggcttcatccgctttaccgacatg
atcgacggccagaccattactcgtcagaccgacgaactgaccggtctgtcttctctggta
gttctggattctgctgaacgtactaccggtggtaaagacctgcgtccggcgctgaaagtc
gttgatgctcagggtaacgatgttctgatcccgggcaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagttcaggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagaaccagcaatcctggcggaaatcgca
ggtatcgtttccttcggtaaagagaccaaagggaagcgtcgtctggtgatcaccccggta
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgatgtgatttccgacggcccggaagcgccgcacgacatc
ctgcgtctgcgtggcgtacatgctgtaacgcgttacatcgttaacgaagtccaggacgta
taccgtctgcagggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgaaagtgcaggtagctccgacttcctggaaggcgagcaggtg
gaatactcccgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtgggggca
accttctcccgcgatctgctgggtattactaaagcgtctttggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccactcgtgtcctgaccgaagcagcggtagcagggaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtaggtcgtctgatcccggcgggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtgccgcgggcgagcagccagca
gcaccacaggtcactgcagaagatgcatctgcaagcctggccgaactgctgaacgcaggt
ctgggtggttcagacaacgattaa
DBGET
integrated database retrieval system
