Streptomyces bingchenggensis: SBI_03368
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Entry
SBI_03368 CDS
T01678
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sbh
Streptomyces bingchenggensis
Pathway
sbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SBI_03368 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbh03019
]
SBI_03368 (pnp)
03016 Transfer RNA biogenesis [BR:
sbh03016
]
SBI_03368 (pnp)
Enzymes [BR:
sbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SBI_03368 (pnp)
Messenger RNA biogenesis [BR:
sbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SBI_03368 (pnp)
Transfer RNA biogenesis [BR:
sbh03016
]
Prokaryotic type
tRNA degradation factors
SBI_03368 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
DUF2017
CdsD_C
KH_2
KH_KhpA-B
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ADI06489
UniProt:
D7CAD2
LinkDB
All DBs
Position
complement(4380858..4383110)
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AA seq
750 aa
AA seq
DB search
MENETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQI
VETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATDKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC
KAQSDLAAKAAKPTGEFPIFLDYQDDVLEALTAAVRDELAQALTIAGKQERETELDRVKG
LAAEKLLPQFEGREKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALLPVLPSREDFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVP
LRAPVAGIAMGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMNEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL
IPVIEDEEGSDASKDEAKDAADSGSAPDAK
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtggagaacgagacccactacgccgaggccgtcatcgacaatggcgccttcggcacccgc
accatccgtttcgagacgggccgcctggcccgtcaggccgccggctccgccgtggcctac
ctggacgacgacaccatggtgctgtcggccaccaccgcatccaagaaccccaaggaccag
ctggacttcttcccgctcacggtcgacgtcgaggagcggatgtacgccgccgggcgcatc
cccggctcgttcttccgtcgcgagggccgcccgtccgaggacgcgatcctcacctgccgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccagatc
gtcgagacgatcatggcgctcaaccccgaccacctctacgacgtggtcgcgatcaacgcc
gcctcctgctccacgcagctggccggcctgcccttctccgggccgatcggcggcacccgg
gtcgccctgatcaggggccagtgggtggccttcccgacccactccgagctcgaggacgcc
gtcttcgacatggtcgtggccggccgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgataagaccatccagctggtcaaggacggcgccgaggcgccg
accgaggaggtcgtggcagcgggcctcgaggccgcgaagcccttcatcaaggtgctctgc
aaggcccagtcggacctcgccgccaaggccgccaagcccaccggcgagttcccgatcttc
ctcgactaccaggacgacgtcctggaggcgctcaccgccgccgtccgcgacgagctcgcc
caggcgctgaccatcgcgggcaagcaggagcgcgagaccgagctggaccgcgtcaagggc
ctggccgccgagaagctgctgccgcagttcgaggggcgcgagaaggagatctccgccgcg
taccggtcgctgaccaagaccctggtccgcgagcgcgtgatcaaggagaagaagcgcatc
gacggccgcggtgtcacggacatccgtacgctggccgccgaggtcgaggcgatcccgcgg
gtccacggctcggcgctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctg
aacatgctccgcatggagcagcagctggacacgctggcgcccgagacccgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgcgctggccgagcgggcgctgctcccggtgctgccg
tcccgcgaggacttcccgtacgccatccgccaggtctccgaggcgctcagctccaacggc
tcgacctccatggggtcggtctgcgcctcgaccatgtcgctgctgaacgccggtgtgccg
ctgagggccccggtcgccggtatcgccatgggcctgatctcccaggagatcgacggcgag
acccactacgtcaccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaagacgttcgtgaccgccctccagctggacaccaagctggac
ggcatcccggcgtccgtgctggccgcggccctcaagcaggcccgcgacgcccggctgcac
atcctcgacgtgatgaacgaggccatcgacgtcccggacgagatgtcgccgaacgcgccg
cggatcatcaccgtcaagatcccggtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgacatcaccatcgaggacgacggc
accatctacatcggtgccgccgacggcccggccgccgaggccgcccgcgccaccatcaac
ggcatcgccaacccgacgatgcccgaggtcggcgagcgctacctgggcacggtcgtgaag
accaccaccttcggtgccttcgtctccctgctcccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctgaag
gtcggcgccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctctcgctg
atccccgtcatcgaggacgaagagggctcggacgcgtcgaaggacgaagcgaaggacgcc
gccgacagcggctccgccccggacgccaagtga
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