Streptomyces bingchenggensis: SBI_06166
Help
Entry
SBI_06166 CDS
T01678
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbh
Streptomyces bingchenggensis
Pathway
sbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SBI_06166 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbh03021
]
SBI_06166 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbh03400
]
SBI_06166 (rpoC)
Enzymes [BR:
sbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SBI_06166 (rpoC)
Transcription machinery [BR:
sbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SBI_06166 (rpoC)
DNA repair and recombination proteins [BR:
sbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SBI_06166 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ADI09286
UniProt:
D7BQR9
LinkDB
All DBs
Position
7476107..7480006
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLEAD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFMGGMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPNGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRAFGSTAEAIMAFDARELSLQAKIDIRFPIGTVPPRGWTPPVPEEGEPAWMPGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKASGFHWAT
RSGVTVAISDVVVPEAKKAIIEGYEAQDEKVQKQYERGLITKDERTQELISIWTKATNEV
ADAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLAIATRG
ADGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDQLVRHGVETVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGSDETAFGVSKRARL
LVGEGDHVEVGQPLTLGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSRFESENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctcgccactgctgacgacatc
cgtcagtggtcccacggtgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgaccagggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgttccgtcgcgtctgggctacctgctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gacgagcgccgcacgcgcgatctgccctcgctggaggcccatgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctggaggcccgcgccaagaagctcgaggcggac
ctcgccgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgcgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctggagggcgatgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcatgggcggcatgggcgccgctgct
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagaagctccgcgagatc
atccggaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacccgcaacagccccaacggcatggtgctggactgcatcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccggaacaaccgcctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtgaccggtcccggtaaccgtccgctgaag
tccctcagcgacatgctgaagggtaagcagggtcgtttccgtcagaacctgctcggcaag
cgagtcgactactcggcccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtgctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgccgaccctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgaccatgcccacccaggac
atggtgctcggcctgttcttcctcaccaccgacgaggaggagcgcaaggtcatcggcgag
ggccgggcgttcggctcgaccgctgaggcgatcatggcgttcgacgcccgcgagctctcg
ctccaggcgaagatcgacatccgcttcccgatcggcaccgtcccgccccgcggctggacc
ccgccggttccggaagagggcgagcctgcctggatgccgggcgacagcttccggctgcgc
accaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtcatcgtcgcggcgaccctggacaatctgaaggcgtccggtttccactgggccacc
cgctccggtgtcaccgtcgcgatctccgacgtcgtcgtccccgaggccaagaaggccatc
atcgagggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgtggtctgatc
accaaggatgagcgcactcaggagctcatctcgatctggaccaaggcgaccaacgaggtt
gccgacgcgatgaacgcgaacttcccgaagaccaaccccatcttcatgatggtcgactcg
ggcgctcgcggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcc
aacgcgaagaacgagaccatcccgcggcccatcaaggcgtcgttccgtgagggtctctcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctcgcggacaccgcgctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcccaggacgtgatc
atccgcgaggaggactgcggcaccgagcgcggtctgaagctcgcgatcgcgaccaggggc
gccgacggtgtgctgcgcaagacggacgacgtcgagaccagcgtgtacgcgcgcatgctc
gccgaggacgtcgtcgtggacggcaaggtcatcgcgccggccaacgtcgacctgggcgat
gtgctcatcgaccagctcgtgcggcacggcgtggagacggtcaagacccgctcggtcctc
acctgcgagtccgccgtcggcacctgtgccttctgctacggccgctcgctggcgaccggc
aagctggtggacatcggcgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcact
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccggatcgaggagaccgagaagaccaagaagatcgtc
gtcactccggacgacggctccgacgagacggccttcggcgtctccaagcgagcccgtctg
ctggtgggcgagggcgatcacgtcgaggtcggccagccgctgaccctgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggccagcgcgccgtccaggtgcacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgggtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgctcgcgcttcgagtccgagaaccgtcgtgtggtccaggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacc
gagtcctggctgtcggcggcgtccttccaggagacgacccgggtgctcaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtgatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgagccgactgaggag
gcgaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
acgggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
integrated database retrieval system
