Sorghum bicolor (sorghum): 110430204
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Entry
110430204 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03015
mRNA surveillance pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110430204
09122 Translation
03013 Nucleocytoplasmic transport
110430204
03015 mRNA surveillance pathway
110430204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110430204
03041 Spliceosome [BR:
sbi03041
]
110430204
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110430204
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110430204
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
110430204
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110430204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
110430204
NCBI-ProteinID:
XP_021303084
LinkDB
All DBs
Position
9:59168124..59172924
Genome browser
AA seq
429 aa
AA seq
DB search
MMGEAKENDVYEEELLDYEEDDDKTVDGSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELL
RAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAAL
VLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRIL
ALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP
VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSV
SRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN
IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ
IDTSTYMPS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagaagccaaggagaacgacgtctacgaagaggagctcctggactacgaggag
gacgatgacaagacggtcgatggctccgccgccaagcccactggagaggtcgcgaagaag
ggctacgtcgggatccacagttccggtttcagagacttcctgctcaagccagagctgctt
cgtgctattcaggattgcggttttgaacatccttccgaagtgcaacacgagtgcatccct
caagccattcttggaatggatgtcatctgtcaagctaaatctgggatggggaaaactgct
gtttttgtcctttcatccctccaacaaattgaccctgttgcgggtcaggtagcagcactt
gtactgtgccacactagggaactggcttaccagatatgtcacgaatttgagaggttcagc
aaatatctccctgaagttaaagttgctgtcttctatggaggtgttcacatcaggaagcat
aaagatttgttgaagaatgaatgccctcatattgtggtcggcacgcctggaaggatactt
gctcttgccagggataaggatctctccctgaagaatgtgaggcacttcattcttgatgaa
tgtgacaagatgcttgaatcactagacatgcggagagacgttcaggagatcttcaaaatg
actcctcatgataagcaagtcatgatgttttccgcaactctcagcaaggagattcgtcct
gtatgcaagaaatttatgcaagatccgatggaaatatatgttgatgatgaggcaaagttg
accctccatggtcttgtacagcactatataaaacttagcgaggctgagaagaaccggaaa
ctgaatgatctcttggatgctctagatttcaaccaagttgtgatatttgtgaagagtgtt
agcagagctgccgaactgaataagttgctttgtgagtgcaacttcccatcaatctgcatt
cattctggaatgacccaggaagaaaggctaaccagatataagaacttcaaggagggtcac
aagagaattcttgtggctacagatttagttggcaggggcattgacattgagcgtgtcaac
attgtgataaactatgacatgccagactcagctgatacatatttgcacagggttggaagg
gctggtcgatttggcacgaagggacttgcaattacctttgtttcctctgcttcggattct
gatgttcttaaccaagtgcaagaaaggtttgaggtagacataaaggaattgcctgagcaa
attgacacttccacctacatgccatcataa
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