Sorghum bicolor (sorghum): 110430397
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Entry
110430397 CDS
T01086
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110430397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110430397
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110430397
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110430397
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
DUF6514
DUF4407
Motif
Other DBs
NCBI-GeneID:
110430397
NCBI-ProteinID:
XP_021303741
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Position
1:12128635..12138897
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AA seq
865 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNNVVSDLESQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGAASVSTTAVLSTKSSVASSPTQPTISTTPSQSTSQDQTEETASQE
SNPESAPQTPPPKGGNPGPSVPAVPIAVSTGSAAVSVPPETISSPVRPTVPTTAAAILSS
AIPRSVPENTPAITSIPANLSTTLKDDESMSFPPRRPSPAITEIGIGRGIARGITSSQGL
GTAPITIGPVPGNGSVSALPAINDLSKRNILNTDEKINSGGLSQQLVTPLGSKVQPQQVP
RTNDAISSDSANPNENPILGGRVFSPPVVSGVQWRPQAAATFQNQSETSQFRGRPEISAD
HREKYIQRLQQVQQQGGSLLNVSHITGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGL
GVQGSDAGHIKSEEQQQILAEDVGVESSATTGANKQTSEDDTKIPYSNPSAPAAESTQLP
RDTDLSPGQPLQPGMSSSGVGVIGRRSVSDLGAIGDNLTGTSASSGHDQLYNMQMLEAAF
HRLPQPKDSERAKTYIPRHPAVTPASYPQIQAPIVSHPTFWERIGSDTLATDMLFFAFYY
QQNTYQQYLAARELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTEDGSG
WCQRIKNDFTFEYNYLEDELSVQTN
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagccggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacactgagaatgccaaccag
aaggagaagttcgaggcggacctcaagaaggagatcaagaagctgcagcggtacagggac
cagatcaagacatggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccgaaagcagattgaacgagagatggaacgatttaaagtt
tgtgagaaggaaacaaaaactaaggccttctcaaaagaagggttaggtcagcaaccaaaa
acagatcccaaagaaaaggccaaagctgaaacaagagactggcttaataatgtggttagt
gatttggaaagccagattgataactttgaagcagaggttgaagggctttcaattaaaaag
ggaaagcaaagaccgcctcgactggtacatttagagaagtctattaccagacataaagct
catataaagaaattggagtcaatcttgagacttttggataatgatgagttgagtcctgag
caagtcaatgatgttaaagatttccttgatgactatgttgaacgtaatcaggaagacttc
gatgaattcagtgatgttgaggacctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttctagtcttgtgaagggtgctgcttctgtttcg
actactgcagttttgagcacaaagagttcagttgcatcttcgcctactcagcctaccata
tcaacaactccttcacaaagtacatcacaagatcaaacagaggagacagcttcacaagaa
agcaatcctgaatctgcgccacaaacaccacctccaaaaggtggaaatcctggaccttca
gtaccagctgtgcccattgctgtcagtactggtagtgcagctgtttctgtacctccagaa
acaattagttcccctgtgcgaccaactgttcccaccacagcggctgcaatactttcttct
gctattccacgaagtgttcctgagaatacgcctgctattacctcaattcctgcaaactta
tctaccaccttgaaggatgatgaaagcatgagttttcctccacgacgaccatctcctgct
attactgaaattggaattggcaggggcatagctcgaggaataactagtagtcagggatta
ggtacagctcccataactattggtccagtcccaggaaatggatcggttagtgcacttcct
gcaataaatgacttgtccaaaagaaatatattgaacactgacgagaagattaatagtggt
ggtctttctcagcagttggttacgcctcttggtagtaaagttcaaccccagcaggttccc
aggactaatgatgcaattagctctgattctgctaatccaaatgaaaatcctattcttggt
ggaagagtattttctcctccagttgtttctggggttcaatggagacctcaagctgctgct
acatttcaaaatcaaagtgaaactagtcaatttcgtggaaggcctgagatttctgctgat
cacagggagaagtacatacaaagactgcagcaagtacagcagcaaggtggcagccttctg
aatgtttctcatataactggcataaatcagaagcaatttccaacacagcaaccaaatccc
cttctacaacagttcaattcacagagttcctctatatcttcccaagtgaatcttgggctt
ggagttcaaggatcagatgctggccatataaaaagtgaagaacagcaacaaattttggct
gaagatgttggtgtggaatcttccgcaacaacgggagcaaataaacaaacaagtgaagat
gacacaaagattccatattcgaatccttcagcacctgcggcagaaagcactcagctgcct
agggatactgatctatcacctgggcagcctttgcaacctggaatgtcatcatctggtgtt
ggtgttatcggccgaagaagtgtatctgatcttggtgcaatcggagataaccttaccgga
acttctgctagttcaggtcatgatcagctttataatatgcaaatgctcgaagctgcattc
cacaggcttccacaacccaaggactctgagcgtgctaaaacttacattccgcggcaccct
gcagttacccctgctagctacccccaaattcaggcaccaatcgtatcacatcccaccttt
tgggaaagaattggtagcgacacattagctactgacatgctgttctttgcattctactac
caacagaacacataccaacaatacttggctgctagagaactgaagaagcaatcatggaga
tttcaccggaggtacaatacctggttccagcggcatgtggagccacaggtcacgactgat
gagtatgagcggggatcatatgtatactttgatttccatgtcaccgaggatggctcagga
tggtgccaaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagcta
tcagtacaaacaaactag
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