Sorghum bicolor (sorghum): 110430480
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Entry
110430480 CDS
T01086
Name
(RefSeq) LOW QUALITY PROTEIN: putative exosome complex exonuclease RRP42
KO
K12589
exosome complex component RRP42
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110430480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110430480
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110430480
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
110430480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH_C
RNase_PH
Rep_N
Motif
Other DBs
NCBI-GeneID:
110430480
NCBI-ProteinID:
XP_021303866
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All DBs
Position
9:54529856..54532255
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AA seq
196 aa
AA seq
DB search
MPTNEKLTTLIELIAHLSVSHNNILISGAAIDLSSLIVVEGKVCWDLYIDRLVVSLDGNL
LDALAASIKVALSDTGIPKVNVSVINAATDEEHEVDVSDEEFLQFDTSSVPVIITLTKMG
QHYIIDATSEEESQMSSAVLVSVNRHDQICGLTKRGGAGLDPSIIFDMLSVAKHVSQQLI
SHLDSEIAAAEAEEAE
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgccaacaaatgagaagttgactacactgattgaattgatagcacatctgtcagtgtca
cataacaacattctcatttcaggtgctgcaattgatctgtcgtccctgattgttgttgag
ggcaaggtctgctgggatctgtacattgataggcttgtggtcagtttagatggtaatttg
ctagatgcgctagctgcttcaataaaggttgctttgagtgatacaggcataccaaaagtt
aatgtttctgttattaatgctgcaactgacgaggagcatgaagttgatgtaagcgatgag
gaatttctgcagttcgacacctccagtgtgcctgttattattacattaaccaagatgggt
cagcactacatcattgacgccacctcagaggaagaatcccagatgagttctgcagtgttg
gtatcagtcaacaggcatgatcagatatgcgggcttaccaagaggggaggtgcagggctg
gacccaagcatcatcttcgatatgctatctgttgccaagcatgtcagccagcagctcatc
tctcacttggattcagagattgctgctgccgaagctgaagaggctgagtga
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