KEGG   Sorghum bicolor (sorghum): 110434126
Entry
110434126         CDS       T01086                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03030  DNA replication
sbi03410  Base excision repair
sbi03420  Nucleotide excision repair
sbi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110434126
   03410 Base excision repair
    110434126
   03420 Nucleotide excision repair
    110434126
   03430 Mismatch repair
    110434126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbi03032]
    110434126
   03036 Chromosome and associated proteins [BR:sbi03036]
    110434126
   03400 DNA repair and recombination proteins [BR:sbi03400]
    110434126
DNA replication proteins [BR:sbi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110434126
  DNA Replication Termination Factors
   ELG1-RFC complex
    110434126
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110434126
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110434126
  Check point factors
   HRAD17(Rad24)-RFC complex
    110434126
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_22 Sigma54_activ_2 DUF815 AAA_16 RuvB_N AAA_24 ABC_tran RsgA_GTPase Mg_chelatase AAA_5 AAA_29 AAA_2 nSTAND3 AAA_11 ATPase_2 nSTAND1
Other DBs
NCBI-GeneID: 110434126
NCBI-ProteinID: XP_021313575
LinkDB
Position
1:complement(4572443..4576829)
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLRKLVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG
AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLRLPAGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQAAPPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAE
LLRKLDADLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtagacaagtaccggccaaaaaccctagacaaggtcaccgtccacgaccag
gtggcgcagaacctcaggaagctcgtgtcggagcaggattgcccgcacctgctgttctat
gggccgtcggggtccgggaagaaaaccctaatcctcgcgctcatcaagcagatgtttggc
gctggtgcggagaaggttaagctggaaaacaagacatggaaaatcgatactggaacaagg
acacttgagatagaattggcaatgttgtcaagtgctcaccatgtggagatgaaccccagt
gatgctggctttcaggacaggtatgttgtccaggaggtcatcaaagagatggcgaagaac
aggccaattgatgccaaaggcaagagagcgtttaaagtccttgtgttaaatgaagttgac
aagctctcacgagaagcccagcattccctccgcagaactatggaaaagtatagctcatcg
tgcaggctgatcctatgctgtaacagctcctcaaaagtgacagaggctgtaagatcccgt
tgcttaaatgtgcgagtaaatgcacccagcgaagatcagattgtccaagttctagagttc
attgggaagaaagaaaacctgcgtcttccagctggatttgcagctcgtatcgcagcacaa
tcaaaccgtaatcttagacgggcaatactgttttttgagacttgcaaagtgcaacaatat
ccatttacatcaaatcaagcggcgcctcctcttgactgggagcaatatgtgtctgaaata
gcaactgatatactgacagaacaaagccctaaaaggctatttgctgtacgtcagaaattc
tatgaattacttgtcaattgtatcccgcctgaaagtattttgaagaaattgttggcagaa
ttactgaggaagttagatgctgatctgaaacatgaaatctgtcactgggctgcacactat
gagcacaagatgcgccttggatcaaaggccatttttcatctagaagctttcgtggccaag
ttcatgagcatttacaaggagtttctggtggctacatttggttga

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