Sorghum bicolor (sorghum): 110434704
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Entry
110434704 CDS
T01086
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110434704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
110434704
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110434704
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
110434704
NCBI-ProteinID:
XP_021315064
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Position
4:complement(12003970..12008344)
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AA seq
852 aa
AA seq
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MDRERSSRRTRDDDGHHRSRDRDDDRHRRRSHHDTDAHRRHDGGDEDRRRRHRDKDGGGG
GEDDRRHRHHHDKDDSRSHRYRDGGDDDRRRGNRRSVSPSESPPPSPKRDRSTSRPRESV
ERCDSTDREPRSSSRKRKGHEGGGDGDEPGRDGGKRARASVDPPPPKEERPRRERRRFED
VDAIGKNGDVSKLGKEISSHEPKKGELSINGDSQNGDAHNAGSQQSLSAVSVPSSVPVPS
KVSSIYTNNANEGVSIRSDEVTVKSSTDGSAMSAAGKSSNLSLDALAKAKKALQLKKELS
EKLKKLPMLNNKPGTAVAATQVSKEEVKTSVSAVDAQLFSKGEAKPTDVSGTLAIGGAIG
IPGLTNIPNLDSVKRAQELAAKMGFRQDPQFGPLINLFPGTSTEVTVPQRPAKAPVLRLD
AQGREIDEQGNVISMTKPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSVHFDERMGLN
QKKLLRPKRPGFQFVEEGKLTRQAELQKIKSQFGEAQAKEFKVKQAQLAKAKTEVDMNPN
LIEVAVGVRAPKQKQKEEIPEIEPWDAKILLSATYEDISVEKLNMDKITIYVEHPEPYDP
PAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSNLMKVLG
SEAVQDPTRLEMEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDPTNTVETIVC
VYKIRDLSHPQTRFKVDVNAQENKLTGAAVITDSISVVVVEGGKKSIKRYNKLMLNRIDW
ATAVGGDEDAEVEADKPVNSCVLVWQGTVAKPTFHRFTVHNCRSEAAAKKVFIDAKVPHY
WDLAVNFSEDSS
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgagcgctcgtcacgccgcactcgcgacgacgacgggcaccaccgatcgcgc
gaccgggacgacgaccggcaccgccgccgcagtcaccacgacaccgacgctcaccgcagg
cacgacggcggagacgaggaccgccgccgccgccaccgcgacaaggacggtggcggaggc
ggcgaggatgaccgccgccaccgtcaccatcacgacaaggacgacagccgtagccaccgc
taccgcgacggcggggacgacgaccgccgccgcgggaaccgacggtccgtgtccccgtcc
gagtccccgccgccctcgccgaagcgggaccgctcgactagccgcccgcgggagtccgtc
gagcgctgcgactccaccgaccgcgagccgcggtcgtcgtcgcggaagcggaagggccac
gagggcggtggcgacggggacgagcccggccgcgacgggggcaagcgggccagggcctcc
gtagacccgcctccacccaaggaggagaggcctaggcgggagcgccggaggtttgaggat
gtcgatgcgattgggaagaatggtgatgtgagtaagctgggtaaggaaatctcgtctcat
gagccgaagaagggggagttatcaattaacggggattcacagaacggcgatgcacataat
gctggttctcagcaatcgctcagtgccgtttctgtgccatcttctgtccccgttccttca
aaggtatcatcaatttataccaacaatgcaaatgagggagttagtattagatctgatgag
gttaccgtaaaatctagtacagatggaagtgcaatgtctgctgctggcaaaagcagtaac
ctatctcttgatgctttagccaaagcaaaaaaagctttgcaactgaagaaggaactgtca
gaaaaactcaagaaattacctatgcttaataataagcctggtacagctgttgctgctaca
caagtttctaaagaagaagtaaaaacttctgtatcagctgtagatgcacaacttttttct
aaaggagaagcaaaacctactgatgtctctggaacgctggccataggtggtgcaattggt
attccaggtcttacaaacattcccaatctcgattctgtgaagcgagcccaagaacttgct
gctaagatggggttccgccaagatccacaattcggtcctctcatcaacttattccctggt
acatctactgaagttactgtaccacaaagacctgcaaaggctcctgttcttcgccttgat
gctcaaggtagggaaattgatgagcagggtaatgtgatcagcatgacaaagccaacaaat
cttagtactctgaaggtcaatataaacaagcagaagaaagaggcttttcaaataatcaag
ccggacttggactctcttgcaaaatcaagtgttcattttgatgaaaggatgggcttaaac
caaaagaagctcctccgtcctaaaaggccaggatttcagttcgttgaagagggtaaactc
accaggcaggctgaattgcagaaaattaagagtcaatttggtgaagcacaagctaaagag
ttcaaagtaaagcaagcccagcttgctaaggcaaagacagaagtagacatgaatccaaat
cttattgaggttgctgttggtgtgagagctccaaaacaaaagcagaaggaagagatccct
gaaattgagccatgggatgcaaaaattttactttctgccacatatgaggatatctctgtg
gagaagcttaatatggacaagatcaccatttatgttgaacatccagaaccatatgatcca
cctgctgaacctgcaccaccgccgccccagccgctgaagttgactaagaaggagcagaag
aagttgagaacacaaaggcgtcttgctaaggaaaaagataggcaagaaatgattaggcaa
ggcctcttggagccacccaagcccaaggtcaaaatgagcaatcttatgaaagtactaggc
tctgaagctgtgcaagatcccacacggttggagatggaaataagaactgctgctgcagag
cgtgagcaggctcacgttgaccgtaacattgcccgcaagcttacaccatctgagcgccgt
gagaagaaagaacggaagctttttgatgatcctactaacacagtggagactatagtttgt
gtttacaagataagagacctgtcccatccacagacacgcttcaaagttgatgtgaatgca
caagagaataaactaacaggtgctgcggtcatcactgatagtatcagtgttgtggttgtt
gaaggggggaagaaatcaatcaaaaggtataataagctcatgctaaaccgtatagactgg
gctactgctgttggtggtgatgaagatgcagaagtggaagccgacaagccagtgaatagc
tgtgtattggtctggcagggtactgtggcaaagcccaccttccacaggttcactgtacac
aactgccggagtgaggctgcagctaagaaggttttcattgatgctaaagttcctcactac
tgggaccttgctgtcaatttctcagaagattcttcctga
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