Sorghum bicolor (sorghum): 110434868
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Entry
110434868 CDS
T01086
Name
(RefSeq) WD repeat-containing protein LWD1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110434868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
110434868
03036 Chromosome and associated proteins [BR:
sbi03036
]
110434868
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
110434868
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
110434868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EIPR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
110434868
NCBI-ProteinID:
XP_021315325
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Position
4:complement(51052936..51054710)
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AA seq
416 aa
AA seq
DB search
MGGAGEGDAWADQEQGNGGGSRGVGGGGGGEAKRSEIYTYEAAWHIYAMNWSVRRDKKYR
LAIASLLEQVTNRVEVVQLDEASGDIAPVLTFDHQYPPTKTMFMPDPHALRPDLLATSAD
HLRIWRIPSPDDADDGAASANNNNGSVRCNGTPQPGIELRCELNGNRNSDYCGPLTSFDW
NDADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRV
FDLRDKEHSTIIYESGSGGGGGGSNSGAGDGGTASPTPLVRLGWNKQDPRYMATIIMDSP
KVVVLDIRYPTLPVVELHRHHAPVNAIAWAPHSSCHICTAGDDMQALIWDLSSMGTGSNG
SGNGNGNAAAAAAAEGGLDPILAYTAGAEIEQLQWSATQPDWVAIAFANKLQILRV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgggcggagccggcgaaggcgatgcttgggcggatcaggagcagggcaacggcgggggc
agccgaggtgtaggcggcggcggcggcggcgaggcgaagcggtcggagatctacacctac
gaggccgcctggcacatctacgcgatgaactggagcgtgcgccgcgataagaagtaccgg
ctcgccatcgccagccttctcgagcaggtcaccaaccgcgtcgaggtcgtccagctcgac
gaggcctcgggcgacatcgcccccgtcctcaccttcgaccaccagtacccgcccaccaag
accatgttcatgccggacccgcacgcgctccgccccgacctgctcgccacctccgccgac
cacctgcgcatctggcgcatcccgtcccccgacgacgccgacgacggcgccgcctctgcc
aacaacaacaacggctccgtccgctgcaacggcaccccgcagccgggcatcgagctgcgc
tgcgagctcaacggtaaccgcaacagcgactactgcggcccgctcacctccttcgactgg
aacgacgccgacccgcgccgcatcggtacctcctccatcgacaccacctgcaccatctgg
gacgtcgagcgcgaggccgtcgacacccagctcatcgcccacgacaaggaggtctacgac
atcgcctggggcggcgcgggggtctttgcctccgtctccgccgacggctctgtccgcgtc
tttgacctacgggacaaggagcactccacaatcatttatgagtctggttcaggtggcggc
ggcggcggttccaactcgggcgccggggatggtgggactgcgtccccgacaccactcgtg
aggttgggctggaacaagcaggacccaaggtacatggccaccatcatcatggacagcccc
aaggtggttgtgcttgatatccgctacccaacactgccagtggtagagctacatcgtcac
catgcccctgtcaatgccatagcgtgggcgcctcactcttcttgccacatctgcacagct
ggggatgacatgcaggcactgatatgggatttgtcatctatgggaactggtagcaatggt
agtggcaatgggaatggtaacgcagctgcggcagcagcagctgagggcggtcttgatccc
attttggcatatacagcaggggcagagattgagcagttgcagtggtcggcaacccagcct
gactgggttgcaattgcatttgccaataagcttcagattctcagggtctga
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