Sorghum bicolor (sorghum): 110435026
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Entry
110435026 CDS
T01086
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110435026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110435026
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110435026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
110435026
NCBI-ProteinID:
XP_021315976
LinkDB
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Position
4:complement(52579401..52584980)
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AA seq
449 aa
AA seq
DB search
MAMEHLRWRPTVNERDFIERALQSDLRVDGRHSFDFRKLKVTFGREDGSSEVQLGETHVM
GYVTAQLVQPYRDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVIDRGLRESRAV
DMESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGDDGQQVT
VHDPEVRDPLPLTIHHMPIAVTFAYFGEGNIVVLDPTYKEEAVMGGRMTVTVNSNGDVCA
IQKAGGEGVMSSVIMQCLRIASVKAADITSKIKKAVDSYTTEKALKKVKRLPTSVPQKIN
VTDVIMEDKGDGELEKQTVQMPSDVQQISKGDEDHQSIKRNSPLTGDRIAKHKQTSTFIG
GTSNWDPYCKGVSLSSLRLSDLPDPPTIVKMSSQEDAQPMTESSNAEVNTSSAVAAGESD
ESQEVGSPKSLKDAIKPKHKRKKKKSDKS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggccatggagcacctccggtggcgccccacggtgaacgagcgcgacttcatcgagcgc
gcgctccagtccgacctccgcgtcgacggccgccactccttcgacttccgcaagctcaag
gtcaccttcggcagggaggacggctcgtcggaggtgcagctcggggagacgcatgtgatg
ggctacgtgaccgcacagctggtgcagccgtaccgtgacaggccgaacgaggggacgctg
gccatattcaccgagttctcacccatggctgaccccgccttcgagcctgggcgtcctggg
gaatcagcaatagagcttggccgagtcatcgaccgtggcctcagggagagtcgagctgtt
gacatggagtccttgtgtgttgttgctgggaagcatgtctggtccgtgcgtgtcgacctt
cacatcttggataatggagggaatctcattgatgcagctaacattgctgcattggcagct
ctatctactttccggagacctgaatgcacggttggtggggacgatggtcagcaagttaca
gttcatgatcctgaggttagggatccgcttcctcttacaatacatcatatgcccatagct
gtaacatttgcatattttggtgaaggcaacatcgtggttcttgatcccacatacaaggaa
gaagcagtaatgggagggaggatgactgttacagttaactcaaatggtgatgtttgtgcc
atccagaaagctggtggagagggtgtcatgtcaagtgttatcatgcagtgtttaagaatt
gcttcggtaaaggctgctgatataacaagcaaaataaagaaagcagttgactcatacacc
accgagaaagctttaaagaaagtaaaacgtttaccaacctcggttcctcagaaaattaat
gtcactgatgtaattatggaggacaaaggtgatggtgaattggaaaagcaaacagtgcag
atgcctagtgacgttcagcagataagcaaaggtgatgaggaccatcaaagtataaaaagg
aattcacccttgactggggatcgaattgctaaacacaaacaaacatcaacattcattggt
ggcacatcaaattgggatccatattgtaaaggagtttcattaagctccctcagactttct
gatttgccggatccaccaactattgtcaagatgagcagccaagaggatgcccaaccaatg
actgaatcatcgaatgctgaggtgaacacctcaagtgctgtggctgctggagagtctgat
gagtcccaggaggttggatcgccaaagagtctaaaagatgctatcaaaccaaaacataaa
agaaagaagaagaaaagtgacaagagttag
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