Sorghum bicolor (sorghum): 8054334
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Entry
8054334 CDS
T01086
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X2
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8054334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8054334
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
8054334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
zf-RING_5
zf-P11
zf-RING_2
DUF1258
Motif
Other DBs
NCBI-GeneID:
8054334
NCBI-ProteinID:
XP_002465550
UniProt:
C5WQW6
LinkDB
All DBs
Position
1:71363613..71367047
Genome browser
AA seq
538 aa
AA seq
DB search
MGGGIGRPRATTASLAPADLVLKAACERCGAASELYLTSCRHTTLCSDCGKTLARARGRC
TVCNAPVTRLIREFDVRVDTSAEKEKTHSIGRFTTGLPPFSKERSTENRWTLRKDVPQGR
QLTGNMRDRHYSKRPWILEDETGEHQYQGQTEDPPATYYSLTLKGNDMIAVQVGPWYNFS
KIAQYKQLTLEEAEEKMNRRRSSASGYERWMMKAATNGAAAFSSGVNRLDVNRGATNGVH
PKKGDRNENGSQSDKVDDEEGGAARKNRLGLTMKGMDEDDEEGGKDIDFDLDDEIEKGDD
WEHEETFTDDDEAVDVDIEERPDLADPEAPPPEIKQDDNENELGGSDNLSKSGQELKKLL
RRAAGENESDVDDKSTDEDDLPSPELAPKQLVPKSEPVDSNPAKPTPSVHTQSATPTSKS
TQKRKSGGGDANTSNGATSKKIKIEPETRTLVVKDEKLSSLEPISKSSLSERRESSPITE
EEVRAVLLAIQPTTCQDLVSRFKPRLITREDKKTFTDIVRKISHKDCFGYVVLRKEQK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcggcataggcaggcctcgcgccaccacggcgagcctcgcgcccgccgacctg
gtcctgaaggcggcgtgcgagcgttgcggtgccgcgtcggagctctacctgacgtcgtgc
cggcacaccaccctctgctccgactgcggcaagaccttggcgcgcgcccgcgggcgctgc
accgtgtgcaacgcccccgttaccaggctcatccgggagttcgatgtccgggtggatacc
tccgcggagaaggagaagacccactccatcggcaggttcaccaccggcttgccgcccttc
tccaaagagaggagcacagaaaacaggtggactcttcgcaaggatgttccccaaggacgg
cagcttactgggaatatgcgggacagacactacagcaagagaccgtggattttggaggat
gagacgggcgaacatcagtatcagggccaaactgaggatccgcctgccacatactattca
ctgacactgaaaggcaatgacatgattgctgttcaagttggtccctggtataacttcagt
aaaattgcacagtacaaacagctgaccttggaagaagctgaagagaaaatgaatagaagg
agaagtagtgcatctgggtatgaacggtggatgatgaaggcagctacaaatggagctgct
gcctttagttcaggtgtgaacaggcttgatgtaaatagaggggcaacaaatggtgttcac
cccaagaaaggagataggaatgagaatggaagtcaatctgacaaagttgacgacgaagaa
gggggcgctgcaaggaaaaacaggcttgggcttacaatgaagggcatggacgaggatgac
gaggaaggtggaaaggacatagactttgatttggatgatgaaattgagaaaggtgacgat
tgggagcacgaagagaccttcactgatgatgatgaggctgtggatgttgatatagaggaa
agacctgatttagctgatcctgaggctcctcctcctgaaattaaacaggatgacaacgag
aatgaactaggcggcagtgacaacttgagcaagtctggtcaggagctaaaaaagctgctt
cgccgagctgctggggaaaatgagtctgacgttgacgacaaaagcacagatgaagatgac
ctaccatcgccagaacttgctccgaaacaacttgtacccaaaagtgaaccagtggatagc
aaccctgctaaaccaacaccatcagtgcacactcagagcgccacacctacatccaaatcc
actcaaaagaggaaatcagggggtggtgatgcaaatacttctaatggggccacctccaaa
aagataaagatagagcctgaaaccagaacattggttgtcaaggatgagaagctgtcttct
ttggaaccaatatcaaaatcatctctttcagaaagaagagaatcctcacccattacagag
gaggaagtcagggcagtacttcttgcaattcaacccaccacatgccaagatctggtgtcg
aggttcaagcctcgtctaataactcgagaggacaagaaaacatttacagacattgtgagg
aaaatatctcacaaggattgctttggctatgtcgttcttcggaaggaacaaaagtga
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