Sorghum bicolor (sorghum): 8055060
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Entry
8055060 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8055060 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8055060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8055060
Membrane trafficking [BR:
sbi04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
8055060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_VPS8_2
WDR55
Beta-prop_EML_2
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_HPS5
TPR_Vps41
ANAPC4_WD40
Clathrin
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40
WD40_Prp19
zf-RING_2
Beta-prop_RIG_2nd
zf-RING_Vps41
zf_RING_Vps8
Herpes_pp85
Motif
Other DBs
NCBI-GeneID:
8055060
NCBI-ProteinID:
XP_002451442
UniProt:
C5XT52
LinkDB
All DBs
Position
4:1880836..1892848
Genome browser
AA seq
1915 aa
AA seq
DB search
MPASSSPAMASQHAPPRRELDLDAFLPSSPTSSASSDADAADPDHRRAVDDLLRLLSSSD
SDSDSEESIRIPSTSSSSRTLSRVQAPAPPPAEPSPLPSPSPPPRRSASASPSETLSSLV
ARTFSSNGASSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSLSAP
VEKVLEEEGSGSKDSKELPSTGSLEAQAEEKGNSEAVAEATDQTSGESVGTELGEDEQAE
VGGEENAEAIKLVEASSLDSVGSVVVEDSTGHEQDDDVNLAETNQVGNQIEAVNEENGDD
QIGDDNHVQSGQDMDLTGVVYEESSDDEHVERSDNIMEEQVESGSLIDKVIEERVGQLEA
SRKAEKNAEKKLKVSMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYM
QIEMDNPVTRAMSSPSFRSDHGSPQVLAVHRSYLAMGTSKGAVIVIPSKYSIHQADDTDA
KMLFFWNQGEKTQSPVTAMCFNQQGDLLLVGYGDGHMTIWDVQKSAAAKVIYGEHTAPVV
HACFIRQSKAITGDSKGVVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLVMDES
FGFSNSSAQGNQTTSSSGGLGSMMGGVVGGVVGVDSGWKFFNEGSSPMEDGVVVMFIMHQ
HALVVRLRTNIDHVDHIETFSRPDGAREGSIAYAAWKYTSSLNESSSVDEERVSWLALAW
DRQVQVAKFVKSKIFKHKEWKLDSAAVGVAWLDDQMLVVLNLRGQLCLFSKDGSELRRTT
FVPDGLLFDDTILHHAHFFNRFGNPERHFNSSVAVRGATVYILGPSFLTVSRLLPWKERI
EALKRAGDWMGALDMAMRLYDGQTQGVVDLPRTVDLIREAIMPYLVELLLSYISYVFEYI
SIALSNHTGKGGESDVLIEADRSLLTQRDEQYARVGGVAVEYCVHIGRNDILFDTVFSKF
VAAQSGGMFLEVLEPYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDF
NQVVRLCREHGLYGALIYLFNQGLNDFRTPLEELLSVVQNTNSKDDTSSGYRMLVYLKYC
FQGLAFPPGHGIIPRSRLHSVREELLQFLLEESKPLTSEVFKGFNASCGKCLNICYLLWM
DTEATLEVLKCAFVQDNFEPRDELPSTVNEDGTDAGSPEGQNTMVQSAVDSIVDIVGLEN
DVICSVVMGKTESEFWPSEKDFGYLMEFVSFLVSHKRAHASKRVVMHILTYLISSYDDTR
TRTQKEKEVLQLFNAVPQNDWNSDFVLNLCSHAHFYQACGLIFTTRNQNLAALDSYMKDK
EEPFHAFIFIDKKLLELVDDEALSFHTTVMSRFPELVKLSRECAFVLAIDHFCDKIQQIL
AELRSDQHSLFLFLKTAIEVHLSGKLDISKLEVRNKQTVELQYSSTDIEDYQQRLSNLSK
LCHNPVYIDDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAAFLQ
ERVGDVGSALDLILAGLDEKISLFISSVENTFSGVTSKSISEIKQLDIVLEMSEAHPVLD
ALHASIGLCQRNSQRLDPEESQSLWFQLLDSFSEPLKKLYGIKDVSGKGARSNWSEAQME
HLKEKGLSQQMRISTKQKCLNVLRKVFSQCVGEIIEAMAGYIPLPAIMAKLLSDNGSQEF
GDFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCICNCS
LSKEGAISAVRLFSCGHATHLQCESEQTRSSNRESKEGCPVCLSTSDTQSRSKSPMFENG
LMKYSGAEHEVSHGIHQTHEVDHAERSRGLQQMSRYEILNNLQKAQKSFHIETVPPLKLA
PPAIYHEKIQKRTTSVGETSKHSVRSQKPQKIWQMKEQKSKQTGSRHPQKSSFLR
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgtcgtcgtcgccggcgatggcgtcgcagcatgccccgccgcggcgggagctg
gaccttgacgctttcctcccttcctctccgacctcctccgcgtcctccgacgccgacgcg
gccgaccccgaccaccgccgcgccgtcgacgacctgctccgcctcctctcctcctcagac
tcggactccgactccgaggagtccatccgcatccccagcaccagcagcagcagccggacg
ctgtcccgcgtccaagcccctgcgccgcctcccgctgagccctcgccgttgccttccccg
tccccgcccccgaggagatccgcatcggcctcgccgtcggagaccctctcctccctcgtc
gcgagaaccttctcgagcaacggcgcttcctcgtcgtccaagcccctcccctcgctcttc
cggggcgtccgccccagccccaagcccggcgccgcacttgccgctgccgccgcggcgtcc
cgcgcggtcctcaccccgcacgctgctgccatcaagtcccgccgatcactctcggcgccc
gtggagaaagttctggaggaagaggggagtggctccaaagactccaaggagcttccttcc
actgggagcttggaagcacaggcagaagagaagggtaattcggaagcggttgctgaggcg
accgatcaaacttcaggtgagagtgtgggtacggaattgggagaggatgaacaggcagaa
gtgggaggtgaagagaatgctgaggctataaagctggtggaggcaagttctctggactct
gtaggctctgttgttgtggaggattccactgggcatgagcaagatgatgatgtcaatttg
gcggaaaccaaccaagttgggaatcaaattgaggctgtcaatgaggaaaatggggatgac
caaattggagatgataatcatgtgcaatcaggtcaggatatggatctaactggggttgtt
tatgaggaaagttctgatgatgaacatgttgaaagatctgacaatatcatggaagaacaa
gtggaatctgggagcttaattgataaagtgattgaagagagggtagggcagctggaggcc
agcaggaaggctgagaagaatgcagagaagaagctgaaggtgtcaatgaaaccattggag
tgggcagaggagcttgagaagaggcaggcctcgtttggtcagcactgggaggaaggagca
gctgcacagcccatgcaactggagggaatcggaaagggtccaccagctatcggttacatg
caaattgagatggacaacccagtgactcgtgccatgtcctcaccatcgtttaggtcagac
catggctctccgcaggtgctggctgttcataggagctatctagcgatgggcacatcaaaa
ggtgctgtcatcgtcattccaagcaaatattccattcatcaagctgatgatacagatgca
aagatgctgttcttttggaaccaaggcgagaagactcaatcaccagtgactgccatgtgc
tttaaccaacaaggggatcttcttctagtaggatatggtgatggtcatatgacaatttgg
gatgtacagaaatctgcagcagcaaaagttatatatggcgagcatacagcaccagtagtg
catgcttgttttatccgccaatctaaagccatcactggggattcaaagggggtagttcta
ttgcacacgttttccattatccccgtaattaatcgtttgactgtcaagggaactcagcgc
ctttttgatgggaatactggaattgtgctatcagcctgtcctcttgttatggatgaatct
tttggttttagtaactcatctgcccagggaaatcagacaacttcctccagtggtggtctt
ggtagcatgatgggtggtgttgttggaggtgtggttggagtagattctggatggaagttt
ttcaatgaaggctcttctccaatggaggatggtgttgtagtcatgtttattatgcatcaa
catgctcttgtggttagactccgtaccaatattgaccatgttgaccatattgagaccttc
tctagaccagatggagcacgtgagggctccatcgcgtatgctgcttggaaatacacatca
tctttgaatgaatcatcatcagtagatgaagaacgagtgtcatggttagcacttgcatgg
gaccgtcaagtccaagttgcaaagtttgttaaatctaagatatttaaacacaaggagtgg
aagcttgatagcgcagctgttggtgttgcctggttggatgaccagatgttagttgtcctt
aatttgagagggcagctctgtttattctctaaagacggcagtgagcttcgcagaactacc
tttgttcctgatggccttctttttgatgacacaatattgcaccatgcacatttttttaac
aggtttggtaacccggagaggcattttaacagttcagtagcagtaagaggtgctacagtg
tatattcttgggccatcttttctcacggtttcccgacttcttccatggaaagagcgaatt
gaagcactaaagagggccggcgattggatgggtgcactagacatggcaatgaggctttat
gatggtcagacacagggtgttgtggatctcccaagaacagttgatttgattagagaagcc
ataatgccttacctagtagagttgctgctgtcatacataagttatgtttttgagtatatc
tcgattgcactgtcaaatcatactggaaaagggggagaatcagatgttctaatagaggca
gatcgatccctgcttacacaaagagatgagcagtacgctcgtgtaggaggagttgcagtt
gagtattgtgtccacattggacgtaatgatatcctttttgatacagtcttctctaagttt
gttgctgcacaaagtggaggtatgtttctggaggtgctagagccctatatattgaaggat
atgcttggttctctgccccctgagatcatgcaagcactagtggaacattatagtggcaaa
ggatggttgcagcgagttgaacaatgcatccttcacatggatatttcttcattggacttt
aatcaggtagtcagactttgtcgtgaacatgggctatacggtgcactaatttatttattt
aaccaaggcctgaatgatttccgtacacctctagaggaacttctatcagtcgttcagaac
accaacagtaaagatgatacttctagtggatataggatgcttgtctatctgaaatattgc
tttcagggcttggcatttcctccagggcatgggataattccccgatcccggcttcattca
gtgagggaagaactcctgcaatttctgcttgaagagtctaagccactcacttctgaagta
tttaagggtttcaatgcttcttgtggaaagtgcctaaacatatgctatctgctatggatg
gatactgaagctactttggaagtcctcaaatgtgcttttgtacaggataactttgaacct
agagatgaacttccgagtactgtcaatgaagatggtactgacgctggaagcccagagggc
caaaatactatggtacaaagtgcagttgattccatcgttgacattgttggtttggaaaat
gatgtgatttgttctgttgtcatgggtaaaactgaatcagaattttggccttcggagaag
gattttggctatttaatggagtttgtgtcgtttttggtttctcacaaaagggctcatgca
tctaagagagttgttatgcacattcttacttatctcatttcatcatatgatgacacaaga
acaaggactcagaaagaaaaagaagttcttcaactcttcaatgcagttccccaaaatgat
tggaattcggattttgtcttgaacctttgttcacatgctcatttttatcaggcctgtggc
ttgatatttacaaccaggaatcagaatttggctgctttagatagttacatgaaggataaa
gaggaacctttccatgcttttatcttcattgataaaaagttactagaattggtggatgat
gaagctttgtcatttcataccacagtaatgtctcgctttcctgagctagtcaagctaagc
agggagtgtgcatttgtcttggccattgatcatttctgtgataagatacagcaaatatta
gcagagcttcgttctgaccaacacagcctctttcttttcttgaaaactgctattgaagta
cacttgtctgggaaacttgacatcagtaagcttgaagtaagaaacaaacaaactgttgaa
ctccagtactcttctactgacattgaagattatcagcagaggctatcaaatctctccaag
ttatgccacaatcctgtttacatcgacgacgagttagttgaactttatctggagctttta
tgtcagtatgagcgaaggtcagtcctgaagtttctggagacttttgacagttacagactg
gagcggtgcttgcatctttgcctagattatggagttacagatgctgctgcattcttgcaa
gagagggttggtgatgttgggagtgccctagaccttattctggctggacttgatgagaaa
attagcctatttatctcttctgtggaaaatactttctctggtgtcacatcgaaaagtatc
tctgaaattaagcaactagacatcgttctagaaatgagtgaggctcatccagtgcttgat
gcattgcatgcctccattggattgtgccaaaggaattcacagcgcttggacccagaggaa
tctcagtccctttggttccaattgcttgactccttctcagagccattgaaaaaactgtat
ggaatcaaggatgtaagtggaaaaggtgccaggtcaaattggagtgaagcacaaatggaa
catctgaaggaaaaaggactatctcaacaaatgaggatttcaactaaacaaaagtgccta
aatgttctgcgaaaagtattttcacaatgtgttggagaaataatagaggccatggccggg
tatatacccctaccggcaatcatggcaaaactgttatccgataatgggagtcaagagttt
ggtgatttcaaacttgtgatacacagaatgttatctatgtatctttatgaaaaaagaata
ctggaaacagctaagtcagtaattgaggatgactcattttacaccttgagcttattaaag
agaggagtttgtcatgggtttgctccacagacttttgtatgttgcatatgcaactgctca
ctttctaaagaaggtgctatttcagctgtacggttgttcagttgtgggcatgcaacccat
cttcagtgtgagtctgagcagaccagatcatccaatcgggaatccaaagagggatgccct
gtctgtctctcaacgagtgatacgcaatctcgaagcaaatcacctatgtttgagaatggg
ctaatgaagtattctggggctgaacatgaagtgtcacatggcatccatcagactcatgaa
gttgatcatgctgagagatctcgtgggcttcaacagatgtcacggtatgaaatactgaat
aatcttcagaaagcgcagaagtcctttcatatagaaaccgtacctccattgaaacttgca
cctccagctatatatcatgagaagatacagaagaggaccacttcagttggtgaaactagc
aaacattcagttagaagtcagaaaccccagaaaatatggcaaatgaaggagcaaaaatca
aaacagactgggagtcgtcatccacaaaagtcaagttttctacgttaa
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