Sorghum bicolor (sorghum): 8055254
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Entry
8055254 CDS
T01086
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
8055254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8055254
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
8055254
DNA repair and recombination proteins [BR:
sbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
8055254
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
Rho_N
Motif
Other DBs
NCBI-GeneID:
8055254
NCBI-ProteinID:
XP_021313040
LinkDB
All DBs
Position
3:65238659..65248571
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AA seq
803 aa
AA seq
DB search
MPLLLRGASLLRLYQCTCGLRSANFSSRVPALVNLITTRDRMRATYSRRAASKNSEVNKD
EQPVIEKEDAAESDLEIESVRSNPSQLQSMTVKELRELTRRMGVSVKGTKKDLVSALMNS
LGVEANGDEGKSSIELVSPSEIPLKRKSGASVVIEQKLESSEIISETPSKKRSRTKQKSS
KSTTLEENSVTNVKLSKTIVQKETFVVQGAVPNDDSEPWTVLVHKKPQAGWIPYNPKTMR
PPPLSKDTRALKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDVEVIK
DTLLDGYTNSFFTCSVSKLGYSGTAIISRVKPLSIKYGLGIPDHDTEGRVVTVEFDDFYL
LTAYVPNSGDGLKRLTYRVTEWDPSLGNYMKELEKSKPVILTGDLNCAHQEIDIHDPAGN
RKSAGFTNEERESFETNFLSKGFVDTFRKQHPSVVAYSYWGYRHNARKTNKVVSAAANMS
TTSSQHGGYPAQRSAANMGSTSSQRGYPARKSEPWTRLTHQERRPQWVAYNPRTMRPPPL
GTDTNCMKILSWNVNGLQTIVQSGFSADELVGRENFDVLCLQETHLQERNVDLFKNLVPE
YDYTYWSCSVARLGYSGTAVISRVQPISVQYGLGVPEHDQEGRLITLEFDDFYLVNAYVP
NSGRGLRRLNYRVNEWDPCFSDFIKKLESSKPVIVAGDLNCARESIDIHNPQAKTEAAGF
TVEERESFEENFSSEGLIDTFRKQHPNAVAYTFWGENQRITNKGWRLDYFLASESIADKV
HDSYTLPDVSLSDHSPIGLVLKL
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgctgctgcgcggcgcctcccttctccgcctctaccagtgtacctgtgggctt
cgaagtgcgaatttcagttcaagagtacctgcactagtgaatctcatcaccacgagggac
agaatgcgggctacatattcgcgtagagctgcctctaagaacagtgaggtcaacaaagat
gagcagccagtcatagagaaggaagatgctgctgaaagtgatttggagatagagagtgtg
aggagcaaccctagccagctccaatcaatgactgtcaaggagctcagggagctcacgagg
aggatgggtgtttctgtgaaaggtaccaagaaagatttagtatcagccttgatgaattct
ctgggcgtggaagcaaatggtgacgagggaaagtcatccattgagctggttagcccctcg
gagatacctttaaaaagaaaaagtggtgcttctgttgtgattgaacaaaaactagaaagt
tctgagattatttctgaaacacctagcaagaaaagaagtagaacaaaacaaaagtcaagc
aagagtaccacccttgaggagaattctgtgactaatgtcaagctaagtaagactattgtc
cagaaggaaacatttgtcgtccaaggtgctgttcctaatgacgattcagagccttggact
gtactcgtgcataagaaaccacaagctggctggattccatacaaccctaagactatgagg
cctccacctcttagcaaggatacacgtgctctgaagattatgtcatggaatgtcaatgga
ttgaaagcattgctcaaatcaagaggcttctctgtgcagcaattagcacagagggaggac
tttgatgtgctatgcttacaagagacaaaaatgcaggagaaggatgttgaagttattaaa
gacactttgcttgatggctacacaaatagtttctttacttgcagtgtgtcaaagcttggc
tattctggcactgcaataatttcaagagtcaaaccactctcgatcaagtatgggcttggt
ataccagaccatgatactgaagggagggttgtgactgtagagttcgatgacttctacctg
ttaactgcttatgtaccaaactctggtgatggtctaaaaagattgacttacagggtcaca
gagtgggatccatcccttggtaactacatgaaagaattggagaaatcgaagcctgtcata
ctaaccggtgaccttaattgtgcgcaccaggagattgatatacatgaccctgccggaaac
cgtaaaagtgcaggcttcacaaacgaggaaagagaatcatttgagaccaattttttgtcc
aaagggtttgttgatacgtttcggaaacagcatcctagtgttgttgcctatagttactgg
gggtacaggcataatgcccggaagacaaacaaagtcgtgtctgccgcggcgaacatgagc
accacatcgtctcagcatggtggttaccctgcccagaggtctgcggcgaacatgggatcc
acatcttctcagcgtggttaccctgcccggaagtctgagccctggactcgccttacccac
caagagagacgaccgcaatgggttgcttataatccaaggacaatgagacctccgccactt
ggcactgataccaattgtatgaagattctgtcctggaacgttaatggacttcaaactatt
gtgcagtcagggttttctgcagatgaattggttggcagagagaactttgacgtcttgtgt
cttcaagagacacacttgcaggagcgcaatgttgacctttttaagaacctggtacctgaa
tatgattacacctattggtcatgcagtgttgcaaggcttggttattcaggaactgctgtg
atatcacgggtacaaccaatctcagtccaatacgggcttggtgtaccagagcatgatcag
gagggcaggcttattaccttggagtttgatgatttttacttggtcaatgcttatgtccca
aattctggccgtggtttacgtagactgaattacagggtcaatgagtgggatccatgcttt
agcgacttcataaagaaactggaatcttccaaaccagtaattgttgctggggatctaaac
tgtgctcgcgaaagtattgacattcacaatcctcaagcaaaaaccgaggctgcaggtttc
acagttgaagagagggagtcatttgaggagaacttctctagcgaaggtcttattgataca
ttccgtaaacaacacccgaatgctgtggcctacactttctggggtgaaaaccagcgcatt
accaacaaaggctggagactggattactttcttgcgtcagagtctattgccgacaaggtc
catgattcctacactctgccagatgtatcgctcagcgatcacagtccaattggccttgtg
cttaagttgtag
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