Sorghum bicolor (sorghum): 8055599
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Entry
8055599 CDS
T01086
Name
(RefSeq) homeobox-leucine zipper protein ROC3
KO
K09338
homeobox-leucine zipper protein
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbi03000
]
8055599
Transcription factors [BR:
sbi03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
8055599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
Cupin_8
Motif
Other DBs
NCBI-GeneID:
8055599
NCBI-ProteinID:
XP_002464880
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All DBs
Position
1:56194113..56201017
Genome browser
AA seq
882 aa
AA seq
DB search
MFGDCQVLSSMAAMAGASSSADALFIPNPGALAGFMSSSAAAMPFHHFSTTAASLIPKEE
GGIMGALQVAKDEDMDQLEMDMELSGGSGSAHLDGLLSFADVDDDRTEQKPQHSGLELQT
TVDAAGQQQQQQQLATANGKKKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLK
PRQVKFWFQNRRTQMKAQQDRADNVLLRAENESLKSDNYRLQAAIRNVVCPNCGHAAVLG
EMSYEEQQLRIENARLKDELDRLACIATRYGGGRQPSMSSALGCLSAPPPVLMPPLDLDM
NVYARHFTDQSSVMGCGDLIQSVLAPQQQIPVGGAEHHATSSFMGAAIGPVQEQDRQLVL
DLAATAADTLAKMCRAGEPLWLRRRGASSEVMVADEHARMFSWPVDGGQQGSASTGAAAR
TEGSRDSAVVIMNSITLVDAFLDANKWMELFPSIVSKARTIQVINHGARSGHMGSGSLLL
MQAEVQFPSPLVPAREVVFFRYCMHNGDEGTWSVVDFPADGFQLEGLQTSSVVKCCRRPS
GCIIQDMPNGYSSVVWVEHMEMVGEEKPLHQVFKDYVASGYAFGATRWVSLLQRQCERLA
SELARNIADLGVIRTPEARTNMMKLSQRMITTFSANISASGSQSWTALSETTEDTIRVTT
RKNTDPGQPSGVILTAVSTSWLPFSHQQVFELLADEQQRCQLEILSNGGSLHEVAHIANG
SHPRNCISLLRINAASNSSQNVELMLQETSTHPDGGSLVVFATVDVDAIQVTMSGEDPSY
IPLLPLGFAIFPATNPSPAATSTSSGNGESSPGNTDEPTSGCLLTVGMQVLASAVPSAKL
NLSSITAINSHVCNAIHQITTALKGQGAGVSGVEPVAAAGSD
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggattgccaggtcctgtcctcgatggccgccatggccggggcctcctcgtcg
gcggacgcgctcttcatccccaacccaggcgcgctcgccggattcatgtcctcctccgcc
gccgccatgccattccaccatttctccaccactgccgcctccctgatacctaaggaggag
ggcggcatcatgggtgcgctccaggtggccaaggacgaggacatggatcagttggagatg
gacatggagctcagcggcggctctgggagcgcccacctggacggcctgctcagcttcgcg
gacgtggacgacgaccggacggagcagaagccgcagcacagcggcctcgaactccagacg
acggtggacgccgccgggcagcagcagcagcagcagcagctggccaccgccaacggcaag
aagaagcggtaccaccgccacacggcacaccagatccagcagatggaagcgctgttcaag
gagtgcccacacccggacgacaagcagcgcctcaagctgagccaggagctggggctcaaa
ccccgccaggtcaagttctggttccagaaccggcgcacccagatgaaggcgcagcaggac
cgcgccgacaacgtcctcctccgcgccgagaacgagagcctcaagagcgacaactaccgc
ctgcaggccgccatccgcaacgtcgtctgccccaactgcggccacgccgccgtcctcgga
gagatgtcctacgaggagcagcagctccgcatcgagaacgccaggctcaaggacgagctc
gaccgcttggcgtgcattgcgacccgctacggcggcggacgacagccgagcatgtcgtcc
gcgctgggctgcttatcggcgccgcctccggtactcatgccgccgctcgacctcgacatg
aatgtatacgctcgccatttcaccgaccagtcttcagtcatgggctgcggcgacctcatc
cagtccgtcctcgcgccacagcagcagatccccgtcggcggcgccgagcaccacgcgacg
tcgtcgttcatgggcgccgccatcgggcctgtccaggagcaggacaggcagctggtgctc
gacctcgccgccacggcggcagacaccctcgccaagatgtgccgcgcgggcgagccgctc
tggctgcggcgccgcggcgcgagctccgaggtcatggtggctgatgagcacgcccggatg
ttcagctggcccgtcgacggcgggcagcagggcagtgcctctacgggtgccgcggccagg
accgagggatcaagggacagcgccgtggttatcatgaacagtattacgctggtggatgcc
ttcctggatgctaacaagtggatggagctgttcccttcgatcgtgtccaaggcaagaacc
attcaggtcataaaccatggagctcgttctggtcatatgggcagtggatctctcctcttg
atgcaagcggaggtgcagttcccgtctcctctggtgccggcgcgggaggtggttttcttc
aggtactgcatgcacaacggcgatgaggggacctggtccgtcgtcgacttcccggccgac
gggttccagctagaaggtctgcagacctcatctgttgtcaagtgctgtaggcgaccctcc
ggttgcatcattcaggacatgcccaacggctactcaagtgtggtgtgggtggagcacatg
gagatggttggagaggagaagccactgcaccaggtgttcaaggattatgttgccagcggc
tatgcctttggggccacacgctgggtgtccctgctccagcgccaatgtgagcgccttgcc
agtgagctcgcccgcaacatcgccgaccttggagtgatccgcactccagaggcgagaaca
aatatgatgaagctgtcacaacggatgataactactttctctgccaacatcagtgcttct
ggaagccaatcttggacggcactctcagaaactacagaggacacaattagggtcactact
cgtaagaacacggatccaggccagcccagtggtgtcattctaactgctgtctctactagt
tggcttcctttcagccatcagcaggtctttgagcttcttgcagatgaacaacagcgttgc
cagcttgagattttgtcaaatgggggctcacttcacgaagtggcacacattgcaaatgga
tcacatccaaggaattgcatttctcttcttcgaattaatgctgcaagcaactcctcccag
aatgtggaactcatgctgcaggagaccagcacccaccctgatggcgggagccttgtggtg
tttgcgactgtggatgtggatgccatccaagtgacaatgagtggcgaggacccttcctac
atcccacttctccccctgggctttgccatcttcccggccaccaacccttcgccagcagca
accagcacaagctccggcaatggtgaaagcagcccaggtaacacagatgagcccaccagt
ggctgcctcctcaccgtcggcatgcaggtgctagcaagcgcggtgccctcagctaagctg
aatctctccagcatcactgcaatcaacagccatgtctgcaacgccatccaccagattaca
accgcactcaaaggccaaggagctggggtgagcggggttgaaccggtggctgctgctggc
tccgactag
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