Sorghum bicolor (sorghum): 8055807
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Entry
8055807 CDS
T01086
Name
(RefSeq) transcription initiation factor TFIID subunit 2
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8055807
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sbi01002
]
8055807
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8055807
03036 Chromosome and associated proteins [BR:
sbi03036
]
8055807
Peptidases and inhibitors [BR:
sbi01002
]
Metallo peptidases
Family M1
8055807
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
8055807
Coactivators
SAGA/TFTC/STAGA complex
8055807
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
8055807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
Peptidase_M1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
8055807
NCBI-ProteinID:
XP_002460197
LinkDB
All DBs
Position
2:58730087..58752546
Genome browser
AA seq
1389 aa
AA seq
DB search
MAKARKQKGDGGGAGAGATVLHQKLCLSIDMENQLIYGYTEIKVLLAENDTFALHADNMT
IRSILVDGETVEFDYSPHWKNESDQPNWSSISCLKTAADAACSTYTSSLNREATPNLIVS
SERSVKSMTEQQLDENSEKHEENSGRLEEHGAKPVQTSYDQILNGCNGSAVEEGIENSAV
EEGKEKEKEKEKEKEEENGNEKSKENGNESENEKVKNIKLFHIDYILEKAETGIHFVGNV
MHSSSQIRRAHCWFPCVDSSTQRCPFDLEFTVSTDFIAVSNGDLLYQVLSKEDPSKKTYV
YKLNTPVSAQWISLVVGPLEVLPDQNDINVSHICLSPALAKLQNTIACFHDAYRCYEDYL
AAPFPLGLYKQIFLPSEMTVLPASLGASTCIFSSDILHDEKVIDQIIGTRIKLAYALAKQ
WFGIYTSAEEPNDEWLLDGLAGFLTELFIKRYLGNNEARYRRFKANCTVCESDVSGATAL
SSTAASSDLYGTQTVGSYGKVRSLKAVAVLQMLEKQMGPDSFRKILQVIVAPNRASRTLS
TKEFRHLANKVGNLERPFLKEFFPRWVESCGCPIMRLGISYSKKRNMIELAVSRGCTAKA
TPDPDIHTNGDTREGDAGWPGMMSVRVHETDGAYDHPVLPMAGEALQVVEIQCHSRLAAK
RVWKKKNTKLDGSDDNIDASTQENRTSVDSPLLWIRVDPEMEYLAEIHFHQPVQMWINQL
EKDKDVISQSQAISVLEKLPQLSFAVINALNNFLNDTKAFWRVRIEAAYALAVTSSEATD
LAGLLHLVKFYKSRRFDADIGMPRPNDFHDVPEYFVLEAIPHAVALVRSSDKNSPKGAIE
FILQLLKYNDNNGNIYSDVYWLSAMVQAIGELEFGQQGMGFLSSLLKRIDRLLQFDNFMP
GYNGVLTVSCIRTLARIARRVSSSVCLDRICDLIAPFRDMDKPWKVRIEASRVLIDLELH
HKGLDAALLLFLKYVDEEKSLRGATKLAVHVLRICQASIVPYANDQINLTTLIGLLHLLA
GTKAYNNVFLRHHVFCILQVAAGRSPTLFGVPKIVTSPPVVKDICSDQHTKADSSIPQPS
KPQEPSTSTPSVREVLPTSGPTKDADNISNCSERRNVVKIRVKLTASSSKASDADHRGHS
HGGRNENEPGPCSSMSVDAPMVGAANEPLNVSNHNIEEQNSCHDRESRMSASVSNAKLMD
RHDINKELQCTADSRLDALPKDQFSPAVNPPEVLDKPGSQLEGVSTSYDGNQAPESVNGV
EMKERKKKDKKDKKRKRDEKRDKKDDPEYLEKKRLKKEKKKMEKELARKQLEGAGRAIPE
QRKTVKPSGSQEVLPARPPAPVLSAEPAPVRSSEPQVSSKETTVDTARTAAKPRIKIKVK
PLVRKPEGN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggcgaggaagcagaagggtgacggtggcggtgcgggcgcaggcgccaccgtg
ctccaccagaagctctgcctctccatcgacatggagaaccagctgatctacgggtacact
gagataaaagttcttctagctgaaaacgacacatttgctctacatgctgacaatatgaca
atcaggagcattctggtggatggtgaaactgttgagtttgactattcccctcattggaaa
aatgaaagtgatcaacctaattggtcttcaatatcatgtttgaagactgctgctgatgct
gcatgttcaacgtatacttcgtctctaaatcgagaagctacaccaaatcttattgtgtca
tctgagagatcagttaagtcaatgactgagcagcagttagatgaaaacagtgaaaagcat
gaagaaaacagtggaaggcttgaagaacatggtgcaaagcctgttcaaacttcctatgat
caaattcttaatggctgcaatggttctgcagttgaagagggaatagaaaattctgcggtg
gaagaaggaaaagaaaaagaaaaagaaaaggaaaaggaaaaggaagaggaaaatggaaat
gagaagagcaaggaaaatggaaatgagtctgaaaatgaaaaggtgaagaacataaaactg
tttcacatagattatattttggagaaggctgaaactggcattcacttcgttggcaatgtc
atgcatagtagcagtcagataaggcgcgcacactgttggtttccgtgtgttgatagttcc
acacaacgctgtccatttgacctagaatttacagttagcacagatttcatcgctgtcagc
aatggtgacttgctttaccaggtcttaagtaaggaagatccttcaaaaaaaacttatgtg
tataaattgaacactccagttagtgcacagtggatatccttggttgttggtccgcttgaa
gttctccctgaccaaaatgacataaatgtctcacacatctgtttatcccctgctttggca
aagcttcagaacactattgcatgtttccatgatgcatacaggtgttatgaagactatctt
gctgcaccgtttcccttaggtttatacaagcagatttttcttccatctgaaatgactgta
ttaccagcaagcttaggagcctccacatgcatcttcagttctgatatcttgcatgatgag
aaggttatagatcagataattggcacaagaatcaaactggcttatgcccttgcaaagcaa
tggtttggaatatacacaagtgcagaggagcccaatgacgaatggctgttggatggtttg
gctggttttcttactgagttatttatcaagcgttaccttgggaataacgaggcgcgttat
aggcgtttcaaggctaactgcacagtatgtgagtctgatgttagtggtgcaactgctttg
agttctactgctgcttcaagtgatttatatggaactcaaacagtcggttcatatgggaaa
gttcgatcattgaaagctgtagctgttcttcaaatgttggaaaaacagatggggccagac
tcctttcggaagattctgcaggtgatagtggctccaaatcgtgcctctagaacacttagt
acgaaagagttcagacaccttgcaaataaggttggtaaccttgaacgcccattcctgaaa
gaattttttccacggtgggttgaatcttgtggatgtccaattatgagattgggaatttca
tatagcaaaaaacggaatatgattgaattagccgtttcaaggggttgcacagcaaaagct
acacccgatcctgatattcacaccaatggtgacactagagaaggcgatgctggatggcca
ggaatgatgagtgtacgtgttcatgagactgatggagcgtatgatcatccagttctgcca
atggctggtgaagctttgcaggtggtggaaatacagtgtcattccagactagcagcaaag
cgcgtttggaagaaaaagaacacaaaacttgatggttctgatgacaacatagatgcctct
actcaagagaaccgcacaagtgtggattcacctttgttgtggattagagtagacccggag
atggaataccttgctgagatccattttcaccagccagttcagatgtggatcaatcagttg
gagaaagacaaagatgttatatctcaatcgcaggcaatatctgtcctggagaaattacct
cagctgtcttttgctgtgattaatgccctcaataatttcctaaatgacacaaaggccttc
tggagagttagaattgaagcagcatatgcactagctgttacatcatctgaggcaactgat
ttagctgggttgcttcatctggttaagttctataaaagccgccgctttgatgcagatatt
ggaatgcccaggccaaacgactttcatgatgtcccagagtactttgttcttgaggcaatc
ccccatgcggtagctcttgttagatcatcggacaagaatagcccaaaaggagccattgag
tttattcttcagctactgaagtacaatgataacaacgggaatatttactctgatgtgtac
tggctatctgcaatggtccaggcaataggcgaactggaatttggccagcagggcatgggc
ttcctatcctcccttctcaagcgaattgatcggctcttgcaatttgacaactttatgcct
ggttataacggggtcttgactgtcagctgcattcgtacccttgcacgaatagctaggagg
gtgtcatcttctgtctgtcttgatcgcatttgtgatttgattgcccctttccgtgacatg
gacaaaccatggaaagttcgaattgaagctagcagggttcttattgatcttgagttacac
cataaaggacttgatgcagctcttttgttgttcttgaaatatgtagatgaagaaaagtct
ttgcgaggagcaacaaagttggctgttcatgtcttgcgtatatgtcaagcaagtattgtt
ccttacgccaatgatcaaataaatttgacaactctaatcggtcttcttcatctgcttgct
ggcacaaaggcatacaataacgtatttcttcgtcatcatgtgttctgtatattgcaagtt
gccgctggaaggtccccaacattatttggtgttccaaagatcgtcacatcccctccggtg
gtcaaggacatatgtagtgatcagcacactaaagctgattcctcgattcctcagccatca
aagcctcaggaaccttccactagcactcctagtgtccgggaggtcttacctacgtctgga
cctactaaagatgctgataatatatctaactgcagcgaaagaaggaatgtggtcaaaatt
agggtgaagcttactgcgtcttccagtaaagcatctgatgctgaccacagaggccattct
catggtggaagaaatgaaaatgaaccaggtccatgtagctcaatgtcagtggatgccccc
atggttggggcagcaaatgaaccattaaatgtaagcaatcataacattgaggaacagaac
tcatgtcatgaccgtgaatcaaggatgtccgcaagtgttagcaatgctaagctaatggac
aggcatgacattaacaaggagctacagtgtactgctgattcaaggctggatgctcttccc
aaggatcagttctctcctgccgttaatccgccagaagttttagacaagcctggcagtcag
cttgaaggtgtctccaccagctatgatggaaaccaagctccagaatctgtgaacggagtg
gaaatgaaagagagaaagaaaaaagacaagaaagataaaaagcggaaacgtgatgaaaaa
cgagataagaaagatgacccagagtatctagagaaaaagcgacttaagaaggagaagaag
aaaatggagaaagagttggccagaaagcagctagagggtgcaggaagagctatccctgaa
cagcggaaaacagtgaaaccttcaggttcacaggaagttttgcctgcaaggccaccagct
ccagtgctaagtgctgaaccagctcctgttcggagctctgaacctcaggtatcaagcaag
gaaacaactgtagatactgcacgtacagcagccaaaccacggataaagatcaaagtcaag
cccttggtaagaaaacctgaagggaactag
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integrated database retrieval system
