Sorghum bicolor (sorghum): 8056059
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Entry
8056059 CDS
T01086
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
sbi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8056059
03450 Non-homologous end-joining
8056059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbi03032
]
8056059
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8056059
DNA replication proteins [BR:
sbi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
8056059
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
8056059
BRCA1-C complex
8056059
NHEJ (non-homologous end-joining)
MRX complex
8056059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
AAA_21
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran_CTD
ABC_tran
AAA_22
AAA_13
DUF1031
AAA_16
Motif
Other DBs
NCBI-GeneID:
8056059
NCBI-ProteinID:
XP_002453866
LinkDB
All DBs
Position
4:complement(47816940..47847025)
Genome browser
AA seq
1315 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQMQEIKTFRLKLENLQTVKDQAHKLRENIAQDQEKSDASKS
QMEQLKEKIHGIESEILQMETRLDELRRIQGQINTKATERSTLFTLQQQQYAALSEENED
TDEELMEWQTKFEERIAVLETKISKLGREMNDEASNSSLLTKQHSELTHEIGKLEAEAEA
HRTMKLERDSDIKNMFTKHNLGPVPEYPFTNDVAMDLTNRIKARLSNLEIDLQEKKKSNE
DQLNVLWKHYLKINARYSEVDGQIQSKIESMSGILRRRKDKEKERDAAEVELSKLNLPRI
DEKERHMQIEIERKTLALGERDYDSIIHQKRTEMFSLEQKIKLLQREKDTINRNADERVR
LVLKKDALGSSNDKLNEIVNEYKDKIRSVLGWVPSEKDMKKEINQAFWPVDKEYNDLKSK
SQEAEQELKLTQSKVTDAREQLTKLRRDMDAKRRFLDSKLQSILQISANVDMFPKVLQDA
MNKRDEQKRLENFANGMREMLAPFEHLARKNHVCPCCERAFTPDEEDEFVKKQRMQNSST
AEKSKALALESSNAEALFQQLDKLRTIYDAYMKLLEETIPLAEKNLNQHLADESQKAQTF
DDLLGVLAQVKMDRDAVEVLLQPTDTIDRHVREIQQLRKEVEELEYTLDSSGQGVKSLEE
IQLELNSLQRTRDTLSIEVDDLRDQHRMLNEDLSSAQVRWHTAREEKVKASKILERFQKF
EEELVLLAEEKEQLIIEKKLLEESLDPLSKEKENLLQEYNASKQRFDEEYHQLAERKRDF
QQELDALGRLNMKIKGYLDSRKIERLKELQGKLALCYSQLQNCEAKHKDISAELNKSKEL
LQSQGQLKRDIDDNLNYRKTKAEVEQLTRDIESLEERVLSIGSSSAIEADLKRHSQEKER
LNSEFNRCQGTLSVYQSNISKHKQELKQTQYKDIEKRYTNQLLQLKTTEMANKDLDRYYT
ALDKALMRFHSMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQTG
DAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLR
IMEARKGQENFQLIVITHDERFAHLIGQRQLAEKYYRVSKDENQHSIIESQEIFD
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtggataagatgctgatcaaggggattcggagcttcgatccggacaacaag
aacgtcatcaccttcttcaagccgctcaccctcatcgtcggccccaacggggctggcaag
accacgatcatcgagtgcctgaagctttcctgcaccggcgagctgccccccaactcccgc
tctggccacaccttcgtccacgaccccaaggtggctggtgagacggaaacaaaaggacag
attaagctgcggtttaagacagcagcaggaaaggatgtggtgtgcatccgatccttccag
cttacccaaaaggcatcaaagatggagtttaaggcaattgaaagcgtcctccagactata
aatccacacacaggggagaaggtctgcctcagctacagatgtgcggacatggatagagag
attcctgccttaatgggtgtttctaaggctgtactggagaatgttatatttgttcaccaa
gatgaatccaattggccattgcaggacccgtcaacacttaagaagaagttcgatgacatc
ttctctgccacccgttataccaaagctcttgaagtcataaagaaacttcacaaggatcaa
atgcaagagatcaagacttttaggttaaagctggagaaccttcagactgtaaaagaccaa
gcacacaagctgcgtgaaaatattgctcaagatcaagaaaagtccgatgcctcaaaatcc
cagatggagcaactgaaggaaaagatccatggtattgaaagcgaaatcctgcaaatggaa
acacgtttggatgaattgagaagaattcaggggcaaattaacaccaaggcaacagagaga
agtacattatttacgcttcagcaacaacagtatgctgcactttctgaggaaaatgaagat
actgatgaggaactaatggaatggcaaacaaaatttgaagaaaggattgcagtactagaa
acgaaaatcagtaaacttggaagagagatgaatgatgaagcgtcaaatagctcccttctg
accaaacaacattctgaattaacacatgaaataggaaagctcgaggcagaagctgaggct
caccggactatgaagcttgaacgagactcggacataaaaaatatgttcactaaacataat
cttgggccggttcctgaatacccctttacgaatgatgttgctatggaccttacaaacagg
attaaagcgagactctcaaatcttgagattgatttgcaggagaagaagaaatccaatgaa
gatcaattaaatgttttgtggaaacactatcttaaaataaatgctcgctactctgaagtc
gatggtcagatacaatctaagattgaatccatgtcaggcattttaagacggagaaaagat
aaagagaaagaacgtgatgctgcagaagtggagctttcaaaacttaatctgccccgtatt
gatgagaaggagagacatatgcaaattgaaattgagaggaagacacttgcccttggagaa
agagactatgattcaattatacatcagaaacgaacagaaatgtttagtttggagcagaaa
attaaattactgcagcgggagaaagatacaataaatagaaatgctgatgaaagagtaaga
ctggttttgaagaaggatgcattgggaagcagcaacgacaagctcaatgagatcgttaat
gagtataaggacaaaatcagaagtgttctggggtgggttccttctgagaaggatatgaag
aaggagatcaatcaagccttttggcctgtggacaaggaatacaatgatttgaaatcaaaa
tcccaggaagcagagcaagagcttaaattgactcagagcaaagtaactgatgctagagaa
caattgacaaaacttcgaagagatatggatgcaaagagaagattcctggactcgaaactt
caatctattctacagatatctgctaatgttgacatgtttcccaaagttctgcaagatgcc
atgaacaaaagagatgagcagaaaaggttagagaattttgcaaatggaatgcgggaaatg
cttgcaccttttgaacatttggctcgtaagaatcatgtctgcccatgctgtgaacgtgct
tttacacctgatgaggaggatgagttcgtgaagaaacaaaggatgcaaaactcaagtact
gcagagaaatctaaagctctggcactggaatcatcaaatgctgaagccctttttcagcaa
ttggataaacttcgtactatctatgatgcttacatgaagctgttagaagaaaccatacct
ctagcagagaaaaacttgaatcaacatttggcagatgaaagtcagaaggcgcagacattt
gatgatcttttgggtgttcttgcccaagttaaaatggacagggatgcagtcgaagtcctg
ttacaacccactgatactattgacaggcatgtacgtgaaatacaacagctacgcaaagaa
gtagaagagcttgaatatacacttgattctagtggccaaggtgtcaagtctttggaggaa
attcaactggagctgaactctctgcagagaacaagggacacattgagtatcgaagtggat
gatcttagggatcagcatagaatgctaaatgaagatctgtcaagcgctcaggtgagatgg
cacactgctcgggaagagaaggtgaaagcttcgaaaatattggaaagattccaaaaattt
gaagaggaattggtgcttctagctgaggaaaaagaacagctgatcatagaaaagaagctt
ctagaagagtctcttgatccattgtccaaagagaaagagaacttgttgcaagagtataat
gcttcgaagcaaaggttcgatgaagagtatcatcagctggcagaaagaaaaagggacttc
cagcaagaacttgatgcacttggaagactcaatatgaagatcaaagggtacttggattcc
aggaaaatcgaaaggcttaaggaattgcagggaaagcttgctctttgctattctcagttg
cagaattgcgaggcaaaacacaaagacatatcagctgagttaaacaagagcaaagaacta
ctgcagagccagggccagttgaaaagagacattgatgacaatctcaactacaggaaaaca
aaggctgaagtggaacaacttactcgtgatatagaatcacttgaagagagggtgctttca
ataggtagctcgtctgctatagaagctgatctgaagcgtcattctcaagaaaaagagagg
cttaattcagagtttaacaggtgtcaaggaactctttctgtttatcaaagtaatatttca
aagcacaaacaagagcttaaacagacacagtacaaggatattgagaagcgatatactaat
caacttctccaacttaagacaactgaaatggcaaacaaggacttggacagatattatact
gctttagacaaggctcttatgcggttccacagcatgaagatggaggagataaataaaata
atcaaggaactgtggcagcagacatacagaggccaggatattgattacataagcataaat
tctgattctgagggtgctggcactcgatcatacagctaccgtgttgttatgcaaacgggt
gatgctgagctggaaatgcgagggcgatgcagtgctggtcagaaggttcttgcttctctt
ataatcagactagcacttgcggaaacgttctgtctgaactgtggcatattggctttggat
gagccaactacgaatcttgatggtccaaatgcagagagccttgctgctgcactgttgaga
ataatggaagccaggaaagggcaggagaacttccagttgattgtaatcactcatgacgag
agatttgcccatcttattggtcaaaggcagcttgctgagaagtactatcgagtctccaag
gatgaaaaccagcacagcataattgaatcccaagagatattcgactga
DBGET
integrated database retrieval system
