KEGG   Sorghum bicolor (sorghum): 8056089
Entry
8056089           CDS       T01086                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03030  DNA replication
sbi03410  Base excision repair
sbi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8056089
   03410 Base excision repair
    8056089
   03420 Nucleotide excision repair
    8056089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbi03032]
    8056089
   03400 DNA repair and recombination proteins [BR:sbi03400]
    8056089
Enzymes [BR:sbi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     8056089
DNA replication proteins [BR:sbi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    8056089
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      8056089
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 8056089
NCBI-ProteinID: XP_021315405
LinkDB
Position
4:49427832..49451499
AA seq 2206 aa
MSGRRGSAARGGGGGGGGNWRRSGSAKAKEQRLRLGAEELLESRLGFAPYTDGERRLGWL
LTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKYKFRPYFYAATKDKMELEVEAYIRR
RYEGEISDIEIIEKEDLDLKNHLSGLKRKYLKLQFDTVQQLMHVRNDLLHVVEKNEEKLD
AVEAFESIHGVKRVERPQDYINYIIDLREYDVPYHVRFAIDNDVRSGQWYNVSVSGSDVL
LQRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMIDGQGYLIINRECVGED
IEDLEYTPKPEFEGYFRVKNVQTELDLLKAWFSHMQEVKPGIYVTYNGDFFDWPFLEKRA
AHHGIKMNEEIGFQCDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYD
PLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRK
GSGTLCEMLLMVQAFKASVICPNKHQADLEKFYNNRLLESETYIGGHVECLETGVFRSDL
PTKFQLEPLAYEQLIGNLDRDLQYAIAVEGKLDIDSVTNYDEVKDAIEQKLVALRDHPIR
EERPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRKLEWVWRGETY
MAKKNDYYHIKRQIESELIQSGGIASSKPFLDLSKPEHLLKLKDRLKKYCQKAHKRVVDK
PITEVREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLAEAKASGNSMKIQEAQD
MVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRP
LELDTDGIWCVLPGSFPENFTFKTKAGKKLTISYPCVMLNVDVARNNTNDQYQTLKDPVN
KTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKGFEIKRRGE
LKLIKVFQAEVFDKFLHGSTLEECYSAVASVANRWLDLLDNQGIDIADSELLDFISESST
MSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVSERAVPVAI
FETDPEIAKHYLRKWCRISSDASIRSIVDWSYYKQRLSSAIQKIITIPAAMQKISNPVPR
VLHPDWLHKKVREKDDRFRQRKLRDIFSPLAKEEGLQNLNRTGDMEDLLISNKDLRKNPS
HGLDIDKENNPNGASVGTGLNNSKKQQNCITGLNVPPASQIQNDAAEETVDKSTDYQGWL
DAKKRKWKYVREQKKRRRLGAAATFDSPNALLSARHANQLPGNSRNRSTFFQKQELALFR
SHWQIIQLASSTVPGHFFAWVVAEGIMFKIPINVPRTFYLNSKAPVTEEFPGRRVKKILP
HGRPCFNLIEVVTTEEQFRAEGKKLAAHLAEPDVEGIYETKIPPDLNAVLQIGCVCKVDK
SAKKRSIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSFNEGRAVYVFYFPTSLRIHAV
VVNPFRNKEISPSFLEKQFRDACQALGSVPENLSFHVDYQTSIDAGSKYVQRMLLEYRQQ
HPGPVIGIIECPKLQAIKAAVRALDDFPCVTIPSNARDNNYQALGWQATAGRTSMQRCAA
STQWFNERISLARYAHVPLGNFELDWLLFTADVFFSRALRDQQQVLWISDDGIPDLGGTY
EGETCFADEVIQPALTYPGAYRRVSVELKIHHLAVNALLKSSQVDEMEGGSIGSFGNDVP
PGPHGTETDFDDASLCIPAFQVLKQLIQRCISDAVSSGNVFADAILQHLYRWLCSPRSKL
HDPALHRLLHNVMKKVFALLLAEFRKLGANVIFANFSKIIIDTGKVDLSSAHAYCDSLLK
TLQTRDLFEWIELEPLHFWHSLLFMDQYNYGGIQAKAQNVDSSDGDNDIDIVSSWNMAED
LPKDTQDHFVLIVSEFLYIPWKFMKEQVATQATIRDDTSCTPSVTVMAAENLEGQVIAHL
RDKISNYFADKLLRTVSDILHHFKGKSKHESDEPANRESDPHTHKGDAALEFIKHVCAVL
ALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCNDCRDLDLCRD
STLQGQEWRCAVPQCGQPYHREQMENALLQVVRQRERLYHLQDLVCVRCRQVKAAHLSEQ
CSCGGSFRCKEESSYFLSKMRVFLKVAVNQKFQLLQDCVQWILEVR
NT seq 6621 nt   +upstreamnt  +downstreamnt
atgagcgggcggcggggttcagctgccagaggcggcggagggggaggcggcgggaactgg
cggcggagcgggtcggcgaaggcgaaggagcagcggctgcgcctgggcgcggaggagctc
ctcgagagccggctgggattcgcgccatacactgacggggagcggcgcctcgggtggctt
ctcacattctcgccgtcatcatgggaagacgaggacaccggaaaaatctacagctgtgtt
gacttatactttgtgtcacaggatgggtctacatttaaagtgaaatacaagtttcggcct
tacttttatgctgcgactaaggacaagatggagttggaagttgaggcatatattaggcga
cgttatgaaggggaaatttctgacatagaaataattgagaaggaggatttagatctgaaa
aatcatctttctggcttgaagagaaaatacctgaagcttcagtttgataccgtacagcaa
ttaatgcatgtaagaaatgacttattacatgttgttgagaagaatgaagaaaaattagat
gctgtggaggcatttgaatcaattcatggtgtaaaaagggtagaaaggccacaagattac
ataaattacatcattgatttgcgtgaatatgatgttccatatcatgttcgttttgctata
gataatgatgtcagaagtggacagtggtacaatgttagtgtatctggttctgatgttttg
cttcagagaagggaagacctgcttcagcgtgcagaagttcatgtatgtgcatttgatatt
gagaccacaaagctgcccctgaagtttccagatgctgaatacgacaccgtaatgatgatt
tcatacatgattgatggacaagggtacctgataatcaacagagagtgcgttggagaagac
attgaagatttggagtacacacctaaacccgaatttgaggggtattttagagttaagaat
gttcaaactgagttggatctacttaaagcatggttttctcatatgcaagaggttaagcct
ggcatttatgttacatacaatggtgacttttttgactggccatttttagagaagagggct
gcacaccatggaataaaaatgaatgaggagattggtttccaatgtgacaataatcagggc
gagtgtcgggctaaattttcttgccatcttgactgttttgcttgggtgaagcgagacagt
taccttccacaaggaagccaaggtctaaaggctgttacaaaagccaagctaggttacgat
cctctggaggttaatccagaagatatggttcgctttgcaatggagcagccacagacaatg
gcttcatattctgtatcagatgctgttgcgacgtattatctatacatgacttatgtccat
cctttcatcttttctcttgcaaccataatacctatgtcacctgatgaggtactgcggaaa
ggaagtgggacactttgtgaaatgctgctaatggttcaggcattcaaggctagtgtcatt
tgtcctaacaagcaccaagctgatctggagaagttctacaataaccgtttattggaaagt
gaaacctacattggtggtcatgttgagtgtcttgaaactggtgtgtttagatctgatctt
cccaccaagttccaacttgaaccattagcatatgagcaactcattggaaatcttgatcgt
gatctgcaatatgccattgctgtagaaggaaagttggatattgattctgtaacaaattat
gatgaagtcaaggatgccatagagcaaaagcttgttgcattgcgagatcacccaattcgt
gaagaacggcctcttatctatcatctggatgttgctgctatgtatccaaatattatttta
actaatagactccagccaccatccatagttacagatgtggactgcacagcatgtgatttt
aatcgtcctggaaaaaattgcctcagaaagcttgaatgggtctggcgaggagagacctac
atggcaaaaaagaatgactattatcacataaagaggcaaattgagtcagagctgattcaa
tctggtggcatcgcatcatcaaagccttttcttgacctctcaaaaccggaacatttactt
aaattgaaggatcgtttgaagaaatactgccaaaaggcgcacaaaagagttgttgataaa
cccattactgaagtcagagaagctggaatatgcatgcgtgaaaattctttctatgtagac
acagtacgaagtttccgtgatagaagatatgaatacaaaggtcttaacaaaacatggaaa
ggaaaattagcagaagcgaaagccagtggaaattctatgaaaatccaggaagcacaggac
atggttgtcctatatgattctttgcaacttgctcacaagtgcatattgaattctttttat
ggatatgttatgcgcaagggagcaagatggtactctatggaaatggctggtgttgtaaca
tatactggtgcaaagattatccaaaatgctcgattacttgtggaaaaaattggaaggcca
ctggaacttgatacagacggcatttggtgtgttttgcctggctcatttccagaaaacttt
actttcaagacaaaagctgggaagaagctaacaatatcttatccctgtgtcatgcttaat
gttgacgttgcaaggaacaacactaatgatcaatatcaaacattgaaagacccagtaaat
aagacatatacaacacacagtgagtgttccattgagtttgaggttgatggaccttacaag
gccatgatcttacctgcctctaaagaggaagggattctgataaagaagaggtatgctgtc
ttcaatgaagatggcaccttggcagaacttaaaggttttgaaatcaagcgtcgaggagag
ctgaagctcataaaagtttttcaggcggaggtgtttgacaaatttcttcatggttcaact
ttggaggaatgctattctgctgttgcctctgttgctaaccggtggttggacctactggat
aatcaaggaattgatattgctgatagtgaattgcttgatttcatctcggagtcgagcaca
atgagtaaatctttagttgactacggagagcagaagtcatgtgctgtaactacagcaaaa
agacttgccgaattccttggagattcgatggttaaagacaaaggactacattgccaatat
atcgttgctcgggagccacaaggcactccagtgagcgagcgtgctgttccggtagctata
tttgagacagatcctgagattgcgaagcactatttaaggaaatggtgtagaatctcctct
gatgcaagcatacgatctattgttgattggtcttactacaagcaacgcctaagttcagct
attcagaaaatcataacaattcctgcagcaatgcaaaagatctcaaatcctgtccctcga
gttcttcatccagattggttacacaaaaaggtcagggagaaagatgatcgatttcggcag
cgtaaactgcgtgatatcttcagtcccttggctaaagaagaggggctgcagaacttgaat
agaactggagatatggaagatttattaatttcaaacaaggatttgagaaaaaatccttct
catggtttagacattgacaaagaaaataatccaaatggagcatcagtgggaactggtttg
aataatagtaaaaaacaacaaaattgtataactgggttaaatgttccccccgcttcacaa
atccaaaatgatgctgctgaggaaacagttgataagagtactgactatcaaggatggctt
gatgctaagaaaagaaagtggaaatatgtccgtgaacaaaaaaaacgtcgaaggttgggt
gctgctgccacttttgacagtcctaatgctttgctctcggcaagacatgccaatcagtta
cctggcaacagtcgaaatagatctacatttttccagaaacaagaattggctctctttaga
tcacattggcagataatccagcttgcttcaagtacagtgcctggtcacttttttgcgtgg
gttgttgctgaagggattatgttcaagattcctattaatgtgcctagaactttttaccta
aactcaaaggctcctgtcacagaagagtttccaggaaggcgtgtcaaaaagattctccca
catggaagaccttgtttcaacctcattgaggttgtaacaactgaagaacaattcagggcc
gaaggcaaaaaacttgcagctcatctagcagagccagatgttgagggaatatacgagaca
aaaattccaccagatctcaatgctgttctccaaattggctgtgtatgcaaagtggacaag
tccgcaaaaaaacgaagtatacaagatggatgggatctcgctgagttgcagatgaaaaca
actgcggagtgctcatatttggaacaaacagtttcatttttctatttataccacagcttc
aatgaaggaagggctgtatatgtattttacttccctacgtctctccgaatacatgcagtg
gttgtcaatcctttccgtaacaaagaaatatctccgtcatttcttgaaaagcaatttcga
gatgcttgccaagcccttggttctgtccctgagaatctttctttccatgtggactaccaa
acatcaattgatgctggtagcaaatacgtgcaaagaatgttacttgagtatagacaacaa
catcctggacctgtcataggcatcatagagtgccctaaactccaagctataaaggcagct
gtacgagcacttgatgatttcccatgtgtaaccattcctagcaatgcacgggacaacaac
tatcaggctctcggttggcaagcaacagctggtcgaacaagtatgcagcgttgtgcagca
tcaacccaatggttcaatgaacggatttcactagctagatatgcacatgtgccactgggt
aattttgagctagactggcttctttttactgctgatgtatttttttcaagggcattgcgt
gatcaacaacaggtactatggatatcggatgatggcattcctgatttaggaggcacttac
gaaggagagacatgttttgctgatgaagtcattcagcctgcacttacttatcctggtgca
tatagaagagtttctgttgagcttaagatccaccatttggcggttaatgctctcctaaag
agtagtcaagtggacgaaatggaaggaggatcaatcggtagctttggaaacgacgtgcct
cctggtccacatggcactgaaactgactttgacgatgctagcttatgtatacctgctttc
caggtgctaaagcaacttattcaaagatgcatttcagatgcagtgtcgtctggaaatgta
tttgctgatgcaatattgcaacatctctaccgctggctttgcagcccacgatcgaaactt
catgatccagctctccatcgtcttcttcataatgtgatgaagaaagtctttgctctattg
ttggctgagttccgaaagctgggagctaatgttatctttgcaaacttttctaagataatc
atagatactggaaaagtagatttgtcatctgcacatgcatattgtgatagcttattgaag
accttgcagacaagggatcttttcgagtggatagaattggaaccattgcacttctggcat
tctttactgttcatggatcagtataactatggcggaattcaagctaaagcacaaaatgtg
gactcttcagatggtgataatgatattgacattgtctcaagctggaacatggcagaagat
ttgcccaaagatacacaggatcactttgtcttaattgtatccgaattcctatatattcca
tggaaattcatgaaggaacaagtagctactcaagctaccataagggatgatacctcatgc
actccatctgtaacagtcatggccgccgagaatcttgagggccaggtgatagcacacctc
cgtgacaagattagcaattactttgcagacaagcttctaagaaccgtaagtgatatactt
caccatttcaaagggaaaagcaagcatgagtcagatgaacctgcaaacagagaatctgat
cctcacacacataaaggcgatgctgcattggagttcattaagcatgtctgtgcagttctt
gctcttgatcagaatgttcagcatgatattttgagaatgaggaagaacctgttaaagttg
gttcgtgtaaaggagtttgctccagaagcacaattccaagacccatgtgcctcattcacc
ctgccaaatgtgatctgcagctattgcaatgattgccgggacctggatctctgccgcgac
tcaacactccagggtcaggagtggagatgcgcggtgccgcagtgtgggcagccataccac
cgtgagcagatggagaacgcacttctacaggtggtccgccagcgagagcggctgtaccac
ctgcaggatctggtgtgcgtgcgctgcaggcaagtgaaagccgcccatttgtcggagcag
tgttcctgtgggggctccttccggtgcaaggaagagtcttcatattttctcagcaaaatg
cgggtgttcctgaaagtggcggtcaaccaaaagttccagctcctgcaagattgcgtgcaa
tggattcttgaagtcagatga

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