Sorghum bicolor (sorghum): 8056147
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Entry
8056147 CDS
T01086
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sbi03036
]
8056147
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
8056147
microRNA pathway
RISC loading complex
8056147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
8056147
NCBI-ProteinID:
XP_021312994
LinkDB
All DBs
Position
3:complement(70664231..70674622)
Genome browser
AA seq
1657 aa
AA seq
DB search
MEAAAAADGGMNLLKRPSNSSPPEDETDKHKRQKRECQDFTPRRYQLDVYEVAMRQNTIA
MLDTGAGKTMIAVMLIKHFGKISKANNDRKLIIFLAPTVQLVTQQCEVIKSYTDFEVEHY
HGAKGVDQWKAHSWQQQFLKYQVMVMTPQVLLDALRQAFLILDMVSLMIFDECHHATGNH
PYTRIMKEFYHGSEHKPNVFGMTASPIIRKGVSSDLDCENQLSELENILDSKIHAVVDRE
EIELCVPSAKEVNRYYEPRTVSFEDLSEELEILCSKYDGLIVQLHNRSTNQYKDADEITK
ESRRRLSKSLAKICYCLEDAGLLCASEATKICIERGQRKGWLKGGSDTTDQQSDPNGPIL
FAEISMLHMKFFQEVLDIIDKRLQQQQGIDALLNSESGCVEAAKMGYISPKLYELMRVFL
SFSDSDNVRCLIFVDRKISARVIERTMKKIGRLSCFRVSFLTGGSSSVDALTPKMQKDTL
DSFRSGKVNLLFTTDVAEEGIHIPDCSCVIRFDLPRTTRSYVQSRGRARQRDSQYILMIE
KGNVKQSDLISRIMRSKTSMTEIASNREPEDSHRNFFPIEEINEYHISTTGAKITTDSSI
SVLNQYCDKLPKDKYYTPRPTFQFTHYGDGYECTVTLPSSAMFQLLVGPKARNMQKAKQL
VCLDACKRLHQLGALDDHLSPSVEETPLEISSKSSISTSGAGLGTTKRKELHGTTKVLSM
SGSWGSDKSVTKLQGYKLNFVCDQVDQKYCDFVLLIDTSIAKEAATLNIDLYLHDKMVKA
SVSPCGPLELDARQMEKTKLFQALLFNGLFGKLFIGSKASKTPREFILKKDDAFLWNKEN
MYLLLPVDSTQDSHKSVCINWSIVDIAATTVGLMRSIYSDGKHNLKDKLNHEKNDENFIR
LANKSCKADDLKNMVVLAIHTGKIYTVLKVSDLCANSKFDGTSDKKEAKFQTFAEYFEKK
YNIFLCHPLQPLLVLKPTHNPHNLLSSKNRDEGNVVENKNRANSLVHMPPELLIPLDLPV
DVLRVFYLFPSLMHRLESLMLASQLRSEIAYTDSDISSFVILEAITTLRCCEDFSMERLE
LLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIRDAAFDP
RRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKACDKGHRWICSKTISDCVE
AIIGAYYVEGGLKAAFAVLKWLQIETLEEEQIMEALSSASVRNYLPKVDVVEFLEAKLGY
TFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLSHKDTDEGELTDL
RSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDRTSLLSSGPSRGP
KVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLELPPFRELNEWCDKNGYF
IGIKCENRGDKTTAILSLQLKDLLLVRQGCGKNKIDAKAHAASLLLRDLEEKGLIIPKNA
SRVEQFEKNSGTRNHCNNLVDVMDTQNVAPPRQKELPVSSTAPGSVLDKPLVVKVKLSKG
GPRVSLYESCKKLQWPMPMFEFVKVEPSVCSSSGDSSQKVAPQGYAFASTITLHIPNGDI
ISLTGDGRADKKSSQDSAALLMLYELQRRGRFQVQEV
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagccgccgccgccgatggaggcatgaatcttttgaagaggccatccaactca
tcgcctccagaagacgaaacagacaagcataaacggcagaagagggaatgccaggatttc
acccccagaaggtaccagcttgatgtctatgaggttgctatgaggcagaacacaattgcg
atgcttgacacgggagctgggaagacaatgattgctgtcatgctcatcaagcattttggg
aagatcagcaaagcaaataatgatcgaaagctcatcatattccttgcaccaacagttcaa
ctcgtcacacagcaatgcgaggttattaagagctacactgattttgaggtggagcattat
catggtgcaaagggtgttgatcaatggaaggctcatagctggcaacaacaattcttaaaa
tatcaggttatggtcatgacaccacaggtgttgctagatgctttacgccaagctttcttg
atcctggacatggttagtctcatgatatttgatgaatgccatcacgcaactggtaaccac
ccatatactaggataatgaaggagttctatcacggatcagagcataaaccaaatgtgttc
ggtatgacagcctctcctatcataagaaaaggggtctcatctgatttggattgcgaaaat
cagctatctgagctggaaaatattttagattccaagatacacgctgtggtggatagagaa
gagatagaactttgtgttccttccgcaaaagaagtgaacagatactatgagccgagaact
gtttcttttgaagatttaagtgaagaactggaaattttgtgttccaagtatgatgggctg
atcgtacaattgcataacagatcgaccaatcagtacaaagatgctgatgaaataacaaaa
gaatcacggagacgtctctcaaaatctttagcaaagatttgctattgccttgaagatgcc
ggtcttctttgtgctagtgaggccactaaaatctgcattgaaagagggcagagaaaaggt
tggctgaaggggggcagtgacaccactgatcagcaaagtgatccaaatggaccaatccta
tttgcagaaatttcaatgcttcatatgaagttctttcaggaagtgttggatataattgac
aaacgcctccaacagcaacaaggaattgatgcccttctgaactcagagagtggatgtgtg
gaagcagcaaagatgggctatatttcaccaaagctctatgagctcatgcgagtatttctt
tctttcagtgactctgataacgtccgatgccttatttttgtggaccgaaagattagtgct
agagtcattgagcggacaatgaagaaaataggccgactctcctgtttcagagtctctttt
ctaactggagggagttcttcagtggatgcactcacccctaaaatgcaaaaggatacgctg
gattcattccgctctggaaaggtcaacttactgtttactacagatgttgcagaagagggt
atacatattccagactgctcgtgtgtaataagatttgatttgccaaggactacccgcagc
tatgtgcaatcacgtggacgagcacgacagcgggactctcagtacatactaatgattgaa
aaggggaatgtgaaacaaagtgatttaatatctaggattatgagaagtaagacctcgatg
actgagattgcttcaaaccgagagcctgaggattcacaccgcaatttcttccccattgaa
gaaataaatgaataccatataagcacaacaggagccaaaataactactgattctagcatc
agtgttctcaaccagtactgtgacaagctcccgaaggacaagtactacaccccaagaccc
acgtttcagttcacccattatggtgatggttatgagtgtactgtaacactaccatccagt
gccatgtttcaacttttggtaggtccaaaagcaagaaatatgcagaaagcaaagcagctt
gtttgccttgatgcatgtaagaggctgcatcagctcggagcacttgatgaccatctttct
ccatcagttgaagagacgcctctggaaatttcaagcaagtctagtatctcaacatctggt
gcaggtttaggtacaaccaaacggaaagagctacatggtacaaccaaagttctttctatg
tctggctcttggggttcagataaaagtgtgactaaacttcaaggctacaagttaaatttt
gtttgtgatcaagttgatcaaaaatactgtgactttgtccttctaattgatacaagtata
gcaaaagaagctgctactttaaatattgatttatatttgcatgacaagatggtaaaagct
tcggtttctccttgtggacctcttgagttggatgctcgacagatggaaaaaacaaaattg
tttcaagcacttctatttaacggtttgtttggaaaactgtttattggatcaaaagcatca
aaaaccccaagggagttcattctcaagaaagatgatgcatttctttggaataaagaaaat
atgtatttgctattacctgtggattctactcaggattctcataaaagtgtttgcatcaac
tggagtatagttgatatagcggctacaactgttggactcatgagaagcatttattcagat
ggcaaacataacctaaaggataaacttaatcatgaaaaaaatgacgaaaattttattcgt
ttggccaacaagtcatgcaaagctgatgatcttaaaaatatggtggttttagcaattcat
actggaaagatatatactgttcttaaggtatctgatttatgtgctaatagtaaatttgat
ggtacatctgacaagaaagaagcaaaattccagacatttgcagaatattttgagaagaag
tataatatatttctttgtcatcctttacaaccattgctagtgttgaaacccacccataat
cctcacaatcttctttcctcaaagaatagagatgaaggcaatgttgtggaaaataaaaat
agggcaaatagccttgttcacatgcctccagagttgctgattccccttgatttacctgtt
gatgttttgagagtattctatttgtttccatctctgatgcatcgtcttgaatcactaatg
ctagccagccaactaagaagtgaaattgcatacacagattctgatatatcgagcttcgtg
attttggaagctattacaacacttagatgctgcgaggacttctcaatggagcgtttagag
ttattgggggactctgttcttaagtatgcagtgagtgcccatcttttcatgacatttctt
aataagcatgaggggcagttatcgtccagaaggcaagaaactatatgtaatgccacactt
tatagacttggtactgaacgcagaatacagggttatatacgtgatgctgcatttgatcct
cgtcgatggcttgctcctggacagctgtccagccgtccctgtccttgtgaatgcccagta
aaatctgaggttataactgaggatattcacagaattgatgacaaatctataattataggc
aaggcgtgtgacaagggacacagatggatatgttctaaaaccatctctgattgtgttgag
gctataattggggcctattatgtggaagggggattaaaagcagcttttgctgttctcaaa
tggttgcagattgagacacttgaggaagagcaaattatggaagccctatcaagtgcttca
gtgcgaaattatcttccaaaagttgatgtagttgaatttcttgaagcaaaactaggctac
acctttcaagtgaaaggtttgctaatagaggctctcacccacccatcacagcaagaatct
ggagcaacatactgctaccagcgcttggaattccttggtgatgcagtcttagatatttta
ataactcgccatttattccttagtcataaagacacagatgagggggagctgacagattta
cggtctgcatcagtaaataatgagaattttgcacaagttgcggtaaagcacaatctccat
cagtttctacaacattcttctgggttcctacaagaccaaattactgaatatgtgaatagt
ctggaaggttcatccatggacagaaccagccttttatccagtgggccatctagggggcca
aaagttctaggtgatattgtagaaagtattgcaggtgctattcttattgacagcaaactt
gatctggatttagtctggcgggttttcaaacctcttctttccccaattgtcacacctgag
aatttggagttacccccattcagagaacttaatgagtggtgtgacaagaatgggtacttt
attggaattaaatgtgaaaatcgaggagacaaaacaacggctattcttagcttacaactc
aaggacttgcttctggtgaggcaaggttgtgggaagaacaaaatagatgcaaaagcacat
gcagcttccttattgctcagggatctagaggaaaaaggacttataattccaaagaatgca
agcagagtggaacaatttgaaaagaattctggtactagaaaccattgcaacaacttggtt
gatgttatggacacacaaaatgtagcaccacctaggcaaaaggaactaccggtgtcaagt
accgctcctggctctgttcttgataaaccattggttgtgaaggttaagttgagtaaagga
ggacctcgtgtatcgttgtatgagtcgtgtaaaaagcttcagtggccaatgcctatgttt
gaatttgtgaaagtcgagccaagtgtgtgctcctcttccggtgattcttcacaaaaggtt
gcaccccaaggatatgcatttgcttcaacaataacattgcatataccgaacggcgatatc
atcagcctcacaggagacggacgtgcggataagaagagctcacaggattctgctgcgctg
ctcatgctctatgagctgcagcggcgaggtagattccaagtccaagaagtatga
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integrated database retrieval system
