Sorghum bicolor (sorghum): 8056387
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Entry
8056387 CDS
T01086
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8056387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8056387
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8056387
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8056387
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8056387
NCBI-ProteinID:
XP_002452981
UniProt:
C5XUG9
LinkDB
All DBs
Position
4:66404743..66405992
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AA seq
288 aa
AA seq
DB search
MAMSDLTATMIPKPDEADDDESVEIREVWADNLEEEFALIRDIVDEFPFVAMDTEFPGIV
CRPVGAFRSPADYNYATLKANVDMLHLIQLGLTFSGPRGELPALGAGRRRCVWQFNFREF
DDARDIFASDSIELLRRSGIDFRRNAERGVDARRFAELLMSSGVVLNDSVYWVTFHAGYD
FGYLLKILTCSSLPDTQAGFFKLMKIYFPTVYDIKHLMKFCNSLHGGLNKLAELLDVERV
GESHQAGSDSLVTSCAFWKLKDSFFAGSTEKYAGVLYGLNAENGVSAH
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgtccgatctcacagccaccatgatcccaaagccagacgaggccgacgacgac
gagtcggtggagatccgggaggtgtgggcggacaacctggaggaggagttcgcgctgatc
cgcgacatcgtcgacgagttcccgttcgtcgcgatggacacggagttcccgggcatcgtc
tgccggcccgtcggcgccttccgctcccccgccgactacaactacgccaccctcaaggcc
aacgttgacatgctgcacctcatccagctcggcctcaccttctccgggccgcgcggcgag
ctgccggccctcggtgctggccgccgccgctgcgtctggcagttcaacttccgcgagttc
gacgacgcgcgcgacatcttcgcctccgactccatcgagctgctccgtcgcagcggcatc
gacttccgccgcaacgccgagcgcggcgtcgatgcgcgacggttcgcagagctcctcatg
tcctccggcgtcgtgctcaacgattccgtatactgggtcaccttccacgcaggatacgac
ttcggctacctactgaagattctcacctgcagtagcctcccagacacacaagccgggttc
tttaaacttatgaagatatatttcccgactgtgtatgacattaagcatctcatgaagttc
tgcaacagcctgcacggtgggctgaacaagctcgccgagctacttgatgtggagcgcgtt
ggggagtctcatcaggctgggtccgatagcctggtcacatcctgtgcattctggaagctc
aaggattcgttcttcgcgggctcaacagaaaaatatgcaggtgtgctgtacgggctcaat
gcagagaatggtgttagtgcacattaa
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