Sorghum bicolor (sorghum): 8056602
Help
Entry
8056602 CDS
T01086
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00040
Pentose and glucuronate interconversions
sbi01100
Metabolic pathways
Module
sbi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8056602
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8056602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
8056602
NCBI-ProteinID:
XP_021319311
LinkDB
All DBs
Position
6:complement(53322199..53326451)
Genome browser
AA seq
582 aa
AA seq
DB search
MAPVVVELMTTTARDLQLADDTAAATHQQARVHQVGDDDEEGIKLAMAAAPAAEAFAVQE
PPADEEALAERQAEVARLLAGFRRHLEDRSAHHLGYPYNLDFDFASLAPFLQGLCINNLG
DPFVESNYGVHSRPLEVAVLDWFARLWDLVPGDYWGYVTSCGSCAAGIICSGIMLAVASF
LACCAAGDAGRELVFDVVAHGARGDGSTDDTKAFEAAWNAACGAKGPSAVMVVPAQRTFL
VGPVSFQGPCASQRVTVQIQGTIMAPPSTAASAWRNGTNLYWLMFDRVDGLRVTGNGVLD
GSGQSWWVRRCHSDAVSTPLRFTRSSTDRTCVGSAPTALKLVSCNNLELSQFSSRNSPQM
HIAIVESSGVNVWGLNIAAPGNSPNTDGVHVERSHGVQITNSTIGTGDDCVSISSGSRFV
TVDGIQCGPGHGVSIGSLGKNGEIAAVEYIDVKNVYFTNTMNGARIKTWEGAQGYARSIS
FTDIEFDNVDHPIIIDQFYRDHTAELAVAISNVTYTNLKGTSALPTAVAFDCGAGAGAGG
SCTDIHVNSVMITRSGGQQTVARCRNAKVSISGQVYPEIPCH
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcaccggtggtagtagagctgatgacgacgacggccagggacctgcagctcgctgat
gacacggctgctgctactcaccagcaagcacgcgtgcaccaggtgggagacgacgacgag
gaaggcatcaagctggccatggcggcggcgccagcggccgaggcgttcgcggtgcaggag
ccaccggcggacgaggaggccttggcggagcggcaggcggaggtggcccggctcctggcc
gggttccggcggcacctcgaggaccggtccgcgcaccacctggggtacccgtacaacctg
gacttcgacttcgcctcgctggcgccgttcctgcagggcctctgcatcaacaacctcggc
gaccccttcgtggagagcaactacggcgtgcactcccggccgctggaggtggcggtgctc
gactggttcgcccgcctctgggacctcgtccccggcgactactggggctacgtcaccagc
tgcggctcctgcgccgccggcataatctgctcgggcattatgctcgccgtcgccagcttc
ctcgcgtgctgcgctgccggcgacgctggcagggagctcgtgtttgacgtcgtggcccac
ggcgcgagaggcgacggcagcacggacgacaccaaggcgttcgaggcggcgtggaacgcg
gcatgcggcgccaaggggccgtcggcggtgatggtcgtgccggcgcagaggacgttcctc
gtcggccccgtcagcttccaggggccctgcgcctcccaaagagtcaccgtgcagatccag
ggcacgatcatggcgccgccgtcgacggcggcgagcgcatggaggaacgggacaaatctc
tactggctgatgttcgatcgcgtggacgggctgagggtgaccggcaacggcgtgctcgac
ggcagtggccagagttggtgggtcaggagatgccacagcgatgccgtgagtacaccgcta
cgttttacacgctcttcaacagacagaacatgcgttggatctgcaccgacggcgctgaag
ctggtgagctgcaacaacctggagctgagccagttcagcagccgcaacagcccgcagatg
cacatcgccatcgtcgagagcagcggcgtcaacgtgtgggggctcaacatcgccgcgccg
gggaacagccccaacacggacggcgtccacgtcgagcggagccacggcgtgcagatcacc
aattctaccatcggcacgggcgacgactgcgtctccataagctccggcagccgattcgtc
accgtcgacggcatccagtgcgggcctggccacggagtaagcattgggagtctcggcaag
aacggcgaaatcgccgccgtggagtacatcgacgtgaagaacgtttacttcacaaataca
atgaatggagctaggatcaagacgtgggagggtgcgcaagggtacgcaagatccatctca
tttaccgacatagaattcgacaacgtggaccaccccataatcatcgaccagttctaccga
gaccacactgccgagctggccgtggcgatcagcaacgtaacgtacaccaacctgaagggg
acctcagccctgccaaccgcggtggcgtttgactgtggcgccggcgccggcgccggcggc
agctgcacagatatccatgtcaactccgttatgatcacgagatccggtggccagcaaaca
gtcgcccgctgtagaaacgcaaaggtgtccatctccggacaagtttacccggagatacca
tgccactga
DBGET
integrated database retrieval system
